Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30871
(729 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g26910.1 68416.m03367 hydroxyproline-rich glycoprotein family... 33 0.26
At1g64450.1 68414.m07306 proline-rich family protein contains pr... 31 1.0
At3g63380.1 68416.m07135 calcium-transporting ATPase, plasma mem... 29 3.2
At2g39370.1 68415.m04832 expressed protein 29 4.2
At3g10770.2 68416.m01297 expressed protein 28 5.5
At3g10770.1 68416.m01296 expressed protein 28 5.5
At2g47350.1 68415.m05911 PAPA-1-like family protein / zinc finge... 28 5.5
At5g21990.1 68418.m02557 tetratricopeptide repeat (TPR)-containi... 28 7.3
At2g48130.1 68415.m06025 protease inhibitor/seed storage/lipid t... 28 7.3
At1g07510.1 68414.m00804 FtsH protease, putative similar to AAA-... 28 7.3
At4g30710.2 68417.m04353 expressed protein contains Pfam domain,... 27 9.6
At4g30710.1 68417.m04352 expressed protein contains Pfam domain,... 27 9.6
At1g56220.3 68414.m06463 dormancy/auxin associated family protei... 27 9.6
>At3g26910.1 68416.m03367 hydroxyproline-rich glycoprotein family
protein common family member:At2g33490 [Arabidopsis
thaliana]
Length = 608
Score = 32.7 bits (71), Expect = 0.26
Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +2
Query: 44 ESRYRSPVSPATNPFSINDFEFEPWASSLLGEM-SNEDSKEPKDGSVEGPPSTPLT 208
+SRY PVS A NP N W SS L + S +D K+ + S G P T
Sbjct: 361 DSRYSKPVSQALNPRPTNHSAGNIWHSSPLEPIKSGKDGKDAESNSFYGRLPRPST 416
>At1g64450.1 68414.m07306 proline-rich family protein contains
proline rich extensins, INTERPRO:IPR0002965
Length = 342
Score = 30.7 bits (66), Expect = 1.0
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +2
Query: 86 FSINDFEFEPWASSLLGEMSNEDSKEPKDGSVEGPPSTPLTPRAPSTP 229
F+++ F P +SS + +S + P + GPP +TPR P +P
Sbjct: 121 FTVHSFPISPPSSSAISTVSA--AVIPDSPIIPGPPDFTVTPRNPDSP 166
>At3g63380.1 68416.m07135 calcium-transporting ATPase, plasma
membrane-type, putative / Ca(2+)-ATPase, putative
(ACA12) identical to SP|Q9LY77 Potential
calcium-transporting ATPase 12, plasma membrane-type (EC
3.6.3.8) (Ca(2+)-ATPase isoform 12) {Arabidopsis
thaliana}; similar to SP|Q9LF79 Calcium-transporting
ATPase 8, plasma membrane-type (EC 3.6.3.8)
(Ca2+-ATPase, isoform 8) {Arabidopsis thaliana};
contains InterPro Accession IPR006069: Cation
transporting ATPase
Length = 1033
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = -1
Query: 231 PGVEGARGVSGVEGGPSTDPSLGSLESSFDISPRREEAQGSNS 103
PG++ GV GV T+P+ G + ++S RR + GSN+
Sbjct: 103 PGIQALGGVEGVAASLRTNPTKGIHGNEQEVS-RRRDLFGSNT 144
>At2g39370.1 68415.m04832 expressed protein
Length = 328
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -1
Query: 165 GSLESSFDISPRREEAQGSNSKSFIENGF 79
GS SF +S RR+ A+ SN+KS GF
Sbjct: 230 GSHRRSFSVSMRRQAAKSSNNKSSNSLGF 258
>At3g10770.2 68416.m01297 expressed protein
Length = 325
Score = 28.3 bits (60), Expect = 5.5
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +2
Query: 53 YRSPVSPATNPFSINDFEFEPWASS 127
Y P++PA +PF+ N + PW +S
Sbjct: 276 YGHPLNPALSPFTHNVASYTPWPNS 300
>At3g10770.1 68416.m01296 expressed protein
Length = 333
Score = 28.3 bits (60), Expect = 5.5
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +2
Query: 53 YRSPVSPATNPFSINDFEFEPWASS 127
Y P++PA +PF+ N + PW +S
Sbjct: 284 YGHPLNPALSPFTHNVASYTPWPNS 308
>At2g47350.1 68415.m05911 PAPA-1-like family protein / zinc finger
(HIT type) family protein contains Pfam domains,
PF04795: PAPA-1-like conserved region and PF04438: HIT
zinc finger
Length = 486
Score = 28.3 bits (60), Expect = 5.5
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = +3
Query: 582 KILN-DKIRRRYGGREKKRFGTVIRSMFQAQRAPLPSCCRTANGPGGLT 725
KIL D R++ G + KKR + + + C RT GP G T
Sbjct: 375 KILGQDSSRKKRGDKIKKRLDDLAQEKAAQEERASTCCIRTIMGPNGTT 423
>At5g21990.1 68418.m02557 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515: TPR Domain
Length = 554
Score = 27.9 bits (59), Expect = 7.3
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +2
Query: 119 ASSLLGEMSNEDSKEPKDGSVEGPPSTPLTPRAPSTPGESAHVVQLLK 262
ASS++G+MS E+ ++ + P P APST +LK
Sbjct: 320 ASSMIGKMSPEEIQKMVQTASSFKGDNPFAPTAPSTENGFTPTPDMLK 367
>At2g48130.1 68415.m06025 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein contains Pfam
protease inhibitor/seed storage/LTP family domain
PF00234
Length = 183
Score = 27.9 bits (59), Expect = 7.3
Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = -1
Query: 237 LSP-GVEGARGVSGVEGGPSTDPSLGSLESSFDISP 133
L+P + GAR SGV GG T PS+G+ SS ++ P
Sbjct: 131 LTPTSLPGAR--SGVGGGSKTVPSVGTGSSSRNVDP 164
>At1g07510.1 68414.m00804 FtsH protease, putative similar to
AAA-metalloprotease FtsH [Pisum sativum] GI:15021761;
contains Pfam profiles PF01434: Peptidase family M41,
PF00004: ATPase AAA family
Length = 813
Score = 27.9 bits (59), Expect = 7.3
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +2
Query: 155 SKEPKDGSVEGPPSTPLTPRAPSTPGESA 241
+K PK + GPP T T A +T GESA
Sbjct: 357 AKIPKGALLVGPPGTGKTLLAKATAGESA 385
>At4g30710.2 68417.m04353 expressed protein contains Pfam domain,
PF04484: Family of unknown function (DUF566)
Length = 644
Score = 27.5 bits (58), Expect = 9.6
Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +2
Query: 47 SRYRSPVSPATNPFSINDFEFEPWASSLLGEMSNEDSKEPKDGSVEGP-PSTPLTPRAPS 223
SRYRSP +P N + P SS S++ + S E PSTP +P +PS
Sbjct: 34 SRYRSP-TPTKNGRCPSPSVTRPTVSS-----SSQSVAAKRAVSAERKRPSTPPSPTSPS 87
Query: 224 TP 229
TP
Sbjct: 88 TP 89
>At4g30710.1 68417.m04352 expressed protein contains Pfam domain,
PF04484: Family of unknown function (DUF566)
Length = 644
Score = 27.5 bits (58), Expect = 9.6
Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +2
Query: 47 SRYRSPVSPATNPFSINDFEFEPWASSLLGEMSNEDSKEPKDGSVEGP-PSTPLTPRAPS 223
SRYRSP +P N + P SS S++ + S E PSTP +P +PS
Sbjct: 34 SRYRSP-TPTKNGRCPSPSVTRPTVSS-----SSQSVAAKRAVSAERKRPSTPPSPTSPS 87
Query: 224 TP 229
TP
Sbjct: 88 TP 89
>At1g56220.3 68414.m06463 dormancy/auxin associated family protein
similar to Auxin-repressed 12.5 kDa protein
(Swiss-Prot:Q05349) [Fragaria ananassa]; similar to
auxin-repressed protein (GI:927034) [Fragaria x
ananassa]; similar to dormancy-associated protein
(GI:2605887) [Pisum sativum]
Length = 140
Score = 27.5 bits (58), Expect = 9.6
Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +2
Query: 59 SPVSPATNPFSINDFEFEPWASSLLGEMSNEDSKEPKDGSVE-GPPSTPLT 208
SP SP +PFS N EP+ S D+ E G E GP S+P T
Sbjct: 90 SPFSPPLSPFSANAGGKEPFR---FRRRSTSDAFEKAAGGSETGPRSSPPT 137
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,478,546
Number of Sequences: 28952
Number of extensions: 264586
Number of successful extensions: 987
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 984
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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