Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30869
         (757 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    25   0.65 
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    25   0.86 
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    24   1.1  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    24   1.1  
DQ855496-1|ABH88183.1|  129|Tribolium castaneum chemosensory pro...    22   6.1  

>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 25.0 bits (52), Expect = 0.65
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = +3

Query: 453 SVSPLTTATSLNWSSPSSPRLMFSTAVVEPYNSYAFSS 566
           S+   T     +W S S P L  + +    YN+Y + S
Sbjct: 223 SIDSFTLEQHRSWCSSSQPVLSTTNSTTNCYNNYPYYS 260


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 24.6 bits (51), Expect = 0.86
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -1

Query: 370 VSELADSVQNQIYDFLCQWCSDHGHSCWPHLPYQ**VVLMKQLSVCASA 224
           +S+  D +    YDF  QW    GH+  P  P +      K+L+V  SA
Sbjct: 696 ISKYLDFINVMTYDFHGQWERTVGHNS-PLFPLESATSYQKKLTVDFSA 743



 Score = 22.2 bits (45), Expect = 4.6
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = -1

Query: 370 VSELADSVQNQIYDFLCQWCSDHGHSCWPHLPYQ**VVLMKQLSVCASADL 218
           VS   D +    YDF  +W  + GH+   + P        KQL+V  +A+L
Sbjct: 267 VSSYLDFINLMAYDFHGKWERETGHNAPLYSPSS-DSQYQKQLNVEHAANL 316


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +3

Query: 489 WSSPSSPRLMFSTAVVEPYNSYAFSSPTQPFE 584
           W  P+S   + ST +  PY S  F+ P +  E
Sbjct: 72  WPQPTSVTKISSTLLKFPYRSIKFNIPDEKNE 103


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 508 RASCFPLRSSSPTTLMPSAHPHNP 579
           RAS +P++     +L P  H +NP
Sbjct: 264 RASPYPMQRPKSASLSPPPHVYNP 287



 Score = 23.0 bits (47), Expect = 2.6
 Identities = 13/34 (38%), Positives = 14/34 (41%)
 Frame = -1

Query: 310 SDHGHSCWPHLPYQ**VVLMKQLSVCASADLINN 209
           S +G    PH P    V    QLS C    L NN
Sbjct: 230 SQYGSWFLPHQPIYPAVTATVQLSTCTRTTLKNN 263


>DQ855496-1|ABH88183.1|  129|Tribolium castaneum chemosensory
           protein 10 protein.
          Length = 129

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -2

Query: 180 RGTCLPAPVSLKKVLKES 127
           RGTC P    LKK L ++
Sbjct: 53  RGTCSPDGEELKKALPDA 70


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,224
Number of Sequences: 336
Number of extensions: 4225
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20234955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)