Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30869
(757 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 260 9e-70
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 260 9e-70
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 258 2e-69
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 258 2e-69
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 245 3e-65
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 245 3e-65
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 231 3e-61
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 114 5e-26
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 113 2e-25
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 111 5e-25
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 111 5e-25
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 110 1e-24
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 109 1e-24
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 108 3e-24
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 108 3e-24
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 104 7e-23
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 89 4e-18
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 88 7e-18
At4g14510.1 68417.m02236 expressed protein contains Pfam domain,... 30 1.9
At1g24460.1 68414.m03081 myosin-related contains TIGRFAM TIGR016... 29 2.5
At1g08370.1 68414.m00926 hydroxyproline-rich glycoprotein family... 29 2.5
At5g09370.1 68418.m01085 protease inhibitor/seed storage/lipid t... 29 3.3
At2g15560.1 68415.m01782 expressed protein contains Pfam profile... 29 4.4
At2g34370.1 68415.m04208 pentatricopeptide (PPR) repeat-containi... 28 5.8
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 260 bits (636), Expect = 9e-70
Identities = 118/173 (68%), Positives = 136/173 (78%)
Frame = +2
Query: 2 ISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHVPR 181
IS+H+GQAG+Q+GNACWELYCLEHGIQPDGQMP+DKT+GGGDD+FNTFFSETGAGKHVPR
Sbjct: 5 ISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPR 64
Query: 182 AVFVDLEPTVVDEVRTGTYRQLFHQNNLLLVRKMRXXXXXXXXXXLAKEIVDLVLDRIRK 361
AVFVDLEPTV+DEVRTGTYRQLFH L+ ++ + KEIVDL LDRIRK
Sbjct: 65 AVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRK 124
Query: 362 LADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGNQSKLEFAI*PAPHV 520
LAD CTGLQGFL+F+ LL+ERLSVDYG +SKL F + P+P V
Sbjct: 125 LADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQV 177
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 260 bits (636), Expect = 9e-70
Identities = 118/173 (68%), Positives = 136/173 (78%)
Frame = +2
Query: 2 ISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHVPR 181
IS+H+GQAG+Q+GNACWELYCLEHGIQPDGQMP+DKT+GGGDD+FNTFFSETGAGKHVPR
Sbjct: 5 ISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPR 64
Query: 182 AVFVDLEPTVVDEVRTGTYRQLFHQNNLLLVRKMRXXXXXXXXXXLAKEIVDLVLDRIRK 361
AVFVDLEPTV+DEVRTGTYRQLFH L+ ++ + KEIVDL LDRIRK
Sbjct: 65 AVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRK 124
Query: 362 LADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGNQSKLEFAI*PAPHV 520
LAD CTGLQGFL+F+ LL+ERLSVDYG +SKL F + P+P V
Sbjct: 125 LADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQV 177
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 258 bits (633), Expect = 2e-69
Identities = 118/173 (68%), Positives = 135/173 (78%)
Frame = +2
Query: 2 ISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHVPR 181
IS+H+GQAG+Q+GNACWELYCLEHGIQPDGQMP DKT+GGGDD+FNTFFSETGAGKHVPR
Sbjct: 5 ISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGKHVPR 64
Query: 182 AVFVDLEPTVVDEVRTGTYRQLFHQNNLLLVRKMRXXXXXXXXXXLAKEIVDLVLDRIRK 361
AVFVDLEPTV+DEVRTGTYRQLFH L+ ++ + KEIVDL LDRIRK
Sbjct: 65 AVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRK 124
Query: 362 LADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGNQSKLEFAI*PAPHV 520
LAD CTGLQGFL+F+ LL+ERLSVDYG +SKL F + P+P V
Sbjct: 125 LADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQV 177
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 258 bits (633), Expect = 2e-69
Identities = 118/173 (68%), Positives = 135/173 (78%)
Frame = +2
Query: 2 ISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHVPR 181
IS+H+GQAG+Q+GNACWELYCLEHGIQPDGQMP DKT+GGGDD+FNTFFSETGAGKHVPR
Sbjct: 5 ISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGKHVPR 64
Query: 182 AVFVDLEPTVVDEVRTGTYRQLFHQNNLLLVRKMRXXXXXXXXXXLAKEIVDLVLDRIRK 361
AVFVDLEPTV+DEVRTGTYRQLFH L+ ++ + KEIVDL LDRIRK
Sbjct: 65 AVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRK 124
Query: 362 LADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGNQSKLEFAI*PAPHV 520
LAD CTGLQGFL+F+ LL+ERLSVDYG +SKL F + P+P V
Sbjct: 125 LADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQV 177
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 245 bits (599), Expect = 3e-65
Identities = 112/173 (64%), Positives = 131/173 (75%)
Frame = +2
Query: 2 ISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHVPR 181
IS+H+GQAG+Q+GN+CWELYCLEHGIQPDG MP+D T+G D+FNTFFSETGAGKHVPR
Sbjct: 5 ISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTTVGVAHDAFNTFFSETGAGKHVPR 64
Query: 182 AVFVDLEPTVVDEVRTGTYRQLFHQNNLLLVRKMRXXXXXXXXXXLAKEIVDLVLDRIRK 361
AVFVDLEPTV+DEVRTGTYRQLFH L+ ++ + KEIVDL LDR+RK
Sbjct: 65 AVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRK 124
Query: 362 LADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGNQSKLEFAI*PAPHV 520
LAD CTGLQGFL+F+ LL+ERLSVDYG +SKL F I P+P V
Sbjct: 125 LADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQV 177
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 245 bits (599), Expect = 3e-65
Identities = 112/173 (64%), Positives = 131/173 (75%)
Frame = +2
Query: 2 ISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHVPR 181
IS+H+GQAG+Q+GN+CWELYCLEHGIQPDG MP+D T+G D+FNTFFSETGAGKHVPR
Sbjct: 5 ISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTTVGVAHDAFNTFFSETGAGKHVPR 64
Query: 182 AVFVDLEPTVVDEVRTGTYRQLFHQNNLLLVRKMRXXXXXXXXXXLAKEIVDLVLDRIRK 361
AVFVDLEPTV+DEVRTGTYRQLFH L+ ++ + KEIVDL LDR+RK
Sbjct: 65 AVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRK 124
Query: 362 LADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGNQSKLEFAI*PAPHV 520
LAD CTGLQGFL+F+ LL+ERLSVDYG +SKL F I P+P V
Sbjct: 125 LADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQV 177
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 231 bits (566), Expect = 3e-61
Identities = 104/173 (60%), Positives = 129/173 (74%)
Frame = +2
Query: 2 ISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHVPR 181
IS+H+GQAG+Q+GN+CWELYCLEHGIQPDG MP+D T+G D+FNTFFSET +G+HVPR
Sbjct: 5 ISIHIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDSTVGACHDAFNTFFSETSSGQHVPR 64
Query: 182 AVFVDLEPTVVDEVRTGTYRQLFHQNNLLLVRKMRXXXXXXXXXXLAKEIVDLVLDRIRK 361
AVF+DLEPTV+DEVRTGTYRQLFH L+ ++ + +EIVD L+R+RK
Sbjct: 65 AVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDTCLERLRK 124
Query: 362 LADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGNQSKLEFAI*PAPHV 520
LAD CTGLQGFL+F+ LL+ERLSVD+G +SKL F I P+P V
Sbjct: 125 LADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDFGKKSKLGFTIYPSPQV 177
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 114 bits (275), Expect = 5e-26
Identities = 59/176 (33%), Positives = 92/176 (52%), Gaps = 3/176 (1%)
Frame = +2
Query: 2 ISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGD---DSFNTFFSETGAGKH 172
+ + GQ G QIG+ WE+ C EHGI P G+ +G D + N +++E G++
Sbjct: 5 LHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRY-----VGNSDLQLERVNVYYNEASCGRY 59
Query: 173 VPRAVFVDLEPTVVDEVRTGTYRQLFHQNNLLLVRKMRXXXXXXXXXXLAKEIVDLVLDR 352
VPRA+ +DLEP +D VRTG Y Q+F +N + + E++D VLD
Sbjct: 60 VPRAILMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDV 119
Query: 353 IRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGNQSKLEFAI*PAPHV 520
+RK A+ C LQGF + H LL+ ++ +Y ++ L F++ P+P V
Sbjct: 120 VRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKV 175
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 113 bits (271), Expect = 2e-25
Identities = 57/173 (32%), Positives = 90/173 (52%)
Frame = +2
Query: 2 ISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHVPR 181
+ V GQ G QIG+ WE+ C EHG+ P G+ D + N +++E G++VPR
Sbjct: 5 LHVQGGQCGNQIGSKFWEVICDEHGVDPTGRYNGDSA-DLQLERINVYYNEASGGRYVPR 63
Query: 182 AVFVDLEPTVVDEVRTGTYRQLFHQNNLLLVRKMRXXXXXXXXXXLAKEIVDLVLDRIRK 361
AV +DLEP +D +R+G Y Q+F +N + + E++D VLD +RK
Sbjct: 64 AVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRK 123
Query: 362 LADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGNQSKLEFAI*PAPHV 520
A+ C LQGF + H LL+ ++ +Y ++ L F++ P+P V
Sbjct: 124 EAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKV 176
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 111 bits (267), Expect = 5e-25
Identities = 57/173 (32%), Positives = 88/173 (50%)
Frame = +2
Query: 2 ISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHVPR 181
+ + GQ G QIG WE+ C EHGI P G+ D + + N +++E G+ VPR
Sbjct: 5 LHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQL--ERINVYYNEASCGRFVPR 62
Query: 182 AVFVDLEPTVVDEVRTGTYRQLFHQNNLLLVRKMRXXXXXXXXXXLAKEIVDLVLDRIRK 361
AV +DLEP +D +R+G Y Q F +N + + E++D VLD +RK
Sbjct: 63 AVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRK 122
Query: 362 LADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGNQSKLEFAI*PAPHV 520
A+ C LQGF + H LL+ ++ +Y ++ L F++ P+P V
Sbjct: 123 EAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKV 175
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 111 bits (267), Expect = 5e-25
Identities = 57/173 (32%), Positives = 88/173 (50%)
Frame = +2
Query: 2 ISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHVPR 181
+ + GQ G QIG WE+ C EHGI P G+ D + + N +++E G+ VPR
Sbjct: 5 LHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQL--ERINVYYNEASCGRFVPR 62
Query: 182 AVFVDLEPTVVDEVRTGTYRQLFHQNNLLLVRKMRXXXXXXXXXXLAKEIVDLVLDRIRK 361
AV +DLEP +D +R+G Y Q F +N + + E++D VLD +RK
Sbjct: 63 AVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRK 122
Query: 362 LADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGNQSKLEFAI*PAPHV 520
A+ C LQGF + H LL+ ++ +Y ++ L F++ P+P V
Sbjct: 123 EAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKV 175
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 110 bits (264), Expect = 1e-24
Identities = 56/173 (32%), Positives = 90/173 (52%)
Frame = +2
Query: 2 ISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHVPR 181
+ + GQ G QIG+ WE+ C EHGI G+ D T + N +++E G++VPR
Sbjct: 5 LHIQGGQCGNQIGSKFWEVICDEHGIDSTGRYSGD-TADLQLERINVYYNEASGGRYVPR 63
Query: 182 AVFVDLEPTVVDEVRTGTYRQLFHQNNLLLVRKMRXXXXXXXXXXLAKEIVDLVLDRIRK 361
AV +DLEP +D +R+G + Q+F +N + + E++D VLD +RK
Sbjct: 64 AVLMDLEPGTMDSIRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRK 123
Query: 362 LADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGNQSKLEFAI*PAPHV 520
A+ C LQGF + H LL+ ++ +Y ++ L F++ P+P V
Sbjct: 124 EAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKV 176
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 109 bits (263), Expect = 1e-24
Identities = 57/173 (32%), Positives = 89/173 (51%)
Frame = +2
Query: 2 ISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHVPR 181
+ + GQ G QIG WE+ C EHGI GQ D + + N +F+E GK+VPR
Sbjct: 5 LHIQGGQCGNQIGAKFWEVICGEHGIDQTGQSCGDTDLQL--ERINVYFNEASGGKYVPR 62
Query: 182 AVFVDLEPTVVDEVRTGTYRQLFHQNNLLLVRKMRXXXXXXXXXXLAKEIVDLVLDRIRK 361
AV +DLEP +D +R+G + Q+F +N + + E++D VLD +RK
Sbjct: 63 AVLMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRK 122
Query: 362 LADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGNQSKLEFAI*PAPHV 520
A+ C LQGF + H LL+ ++ +Y ++ + F++ P+P V
Sbjct: 123 EAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKV 175
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 108 bits (260), Expect = 3e-24
Identities = 56/173 (32%), Positives = 88/173 (50%)
Frame = +2
Query: 2 ISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHVPR 181
+ + GQ G QIG WE+ C EHGI G+ + + + N +++E G+ VPR
Sbjct: 5 LHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYQGENDLQL--ERVNVYYNEASCGRFVPR 62
Query: 182 AVFVDLEPTVVDEVRTGTYRQLFHQNNLLLVRKMRXXXXXXXXXXLAKEIVDLVLDRIRK 361
AV +DLEP +D VR+G Y Q+F +N + + E++D VLD +RK
Sbjct: 63 AVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRK 122
Query: 362 LADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGNQSKLEFAI*PAPHV 520
A+ C LQGF + H LL+ ++ +Y ++ L F++ P+P V
Sbjct: 123 EAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKV 175
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 108 bits (260), Expect = 3e-24
Identities = 56/173 (32%), Positives = 90/173 (52%)
Frame = +2
Query: 2 ISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHVPR 181
+ + GQ G QIG+ WE+ LEHGI G+ D + + N +++E G++VPR
Sbjct: 5 LHIQGGQCGNQIGSKFWEVVNLEHGIDQTGRYVGDSELQL--ERVNVYYNEASCGRYVPR 62
Query: 182 AVFVDLEPTVVDEVRTGTYRQLFHQNNLLLVRKMRXXXXXXXXXXLAKEIVDLVLDRIRK 361
AV +DLEP +D VR+G Y Q+F +N + + E++D VLD +RK
Sbjct: 63 AVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRK 122
Query: 362 LADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGNQSKLEFAI*PAPHV 520
A+ C LQGF + H LL+ ++ +Y ++ + F++ P+P V
Sbjct: 123 EAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKV 175
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 104 bits (249), Expect = 7e-23
Identities = 55/173 (31%), Positives = 88/173 (50%)
Frame = +2
Query: 2 ISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHVPR 181
+ + GQ G QIG WE+ C EHGI GQ D + + + +F+E GK+VPR
Sbjct: 5 LHIQGGQCGNQIGAKFWEVICDEHGIDHTGQYVGDSPLQL--ERIDVYFNEASGGKYVPR 62
Query: 182 AVFVDLEPTVVDEVRTGTYRQLFHQNNLLLVRKMRXXXXXXXXXXLAKEIVDLVLDRIRK 361
AV +DLEP +D +R+G + Q+F +N + + E++D VLD +RK
Sbjct: 63 AVLMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRK 122
Query: 362 LADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGNQSKLEFAI*PAPHV 520
A+ LQGF + H LL+ ++ +Y ++ + F++ P+P V
Sbjct: 123 EAENSDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKV 175
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 88.6 bits (210), Expect = 4e-18
Identities = 52/170 (30%), Positives = 82/170 (48%), Gaps = 1/170 (0%)
Frame = +2
Query: 2 ISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHVPR 181
I++ VGQ G QIG W+ CLEHGI DG + T GG D + FF + ++PR
Sbjct: 6 ITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGG--DRKDVFFYQADDQHYIPR 63
Query: 182 AVFVDLEPTVVDEVRTGTYRQLF-HQNNLLLVRKMRXXXXXXXXXXLAKEIVDLVLDRIR 358
A+ +DLEP V++ ++ G YR L+ H+N L K + + ++D I
Sbjct: 64 ALLIDLEPRVINGIQNGEYRNLYNHENIFLSDHGGGAGNNWASGYHQGKGVEEEIMDMID 123
Query: 359 KLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGNQSKLEFAI*P 508
+ AD L+GF++ H L+E L+ Y + +++ P
Sbjct: 124 READGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYSVFP 173
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 87.8 bits (208), Expect = 7e-18
Identities = 51/170 (30%), Positives = 82/170 (48%), Gaps = 1/170 (0%)
Frame = +2
Query: 2 ISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHVPR 181
I++ VGQ G QIG W+ CLEHGI DG + T GG D + FF + ++PR
Sbjct: 6 ITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGG--DRKDVFFYQADDQHYIPR 63
Query: 182 AVFVDLEPTVVDEVRTGTYRQLF-HQNNLLLVRKMRXXXXXXXXXXLAKEIVDLVLDRIR 358
A+ +DLEP V++ ++ G YR L+ H+N + K + + ++D I
Sbjct: 64 ALLIDLEPRVINGIQNGDYRNLYNHENIFVADHGGGAGNNWASGYHQGKGVEEEIMDMID 123
Query: 359 KLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGNQSKLEFAI*P 508
+ AD L+GF++ H L+E L+ Y + +++ P
Sbjct: 124 READGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYSVFP 173
>At4g14510.1 68417.m02236 expressed protein contains Pfam domain,
PF04581: Protein of unknown function (DUF578)
Length = 932
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +2
Query: 68 EHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVD 217
E GIQ +G + ++ + G D +T F + A P FV+L+ +D
Sbjct: 881 EGGIQANGSL-SETDVEFGSDESDTDFGDNSASSTTPETTFVELQNEELD 929
>At1g24460.1 68414.m03081 myosin-related contains TIGRFAM TIGR01612:
reticulocyte binding protein; similar to Myosin heavy
chain, non-muscle (Zipper protein) (Myosin II)
(SP:Q99323) {Drosophila melanogaster} similar to EST
gb|T76116
Length = 1730
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -1
Query: 427 AGTSTEGVEDQESLQTGTLVSELADSVQNQIYD 329
+G TEGVED S LV D ++ QI D
Sbjct: 609 SGLMTEGVEDHTSSDINLLVDRSFDKIEKQIRD 641
>At1g08370.1 68414.m00926 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965; contains some similarity to
transcription factor [Danio rerio]
gi|15617376|emb|CAC69871
Length = 367
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +1
Query: 541 PTTLMPSAHPHNPLSTLNCSFSLGTTIERPFY*HSGPPVILDNWSGP 681
P MP+A P NP + + S GT + +PF + PP + +GP
Sbjct: 287 PGVSMPTAPPLNPNNASHQQRSYGTPVLQPFPPPTPPPSLAPAPTGP 333
>At5g09370.1 68418.m01085 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to lipid
transfer protein - Hordeum vulgare, EMBL:AF109195;
contains Pfam protease inhibitor/seed storage/LTP family
domain PF00234
Length = 158
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/42 (33%), Positives = 17/42 (40%)
Frame = -2
Query: 159 PVSLKKVLKESSPPPMVLSVGIWPSGWMPCSRQ*SSQQALPI 34
PVS L +SPP +W SGW P +PI
Sbjct: 101 PVSACDSLPPASPPTANGQAPVWGSGWAPAPSPSKGNSLIPI 142
>At2g15560.1 68415.m01782 expressed protein contains Pfam profile
PF04396: Protein of unknown function, DUF537
Length = 489
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = -1
Query: 442 GSEPRAGTSTEGVEDQESLQTGTLVSEL-ADSVQNQIYDFLCQWCSDHGHSCW 287
G EP T+ GV E TG++ SE + + ++ D L +C C+
Sbjct: 388 GKEPNGVTTNGGVSSDEMSDTGSVQSERNLEEFKFELQDILVSYCCQVQMDCF 440
>At2g34370.1 68415.m04208 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 469
Score = 28.3 bits (60), Expect = 5.8
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = -1
Query: 532 TAVENMRRGLDGELQFRLVAVVNGETLHQ 446
T ++NMR +DG F++++++ G L Q
Sbjct: 421 TVLQNMRTCIDGHNTFKMISLITGRALIQ 449
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,910,972
Number of Sequences: 28952
Number of extensions: 396905
Number of successful extensions: 1227
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1181
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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