Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30868
         (850 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    33   0.004
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    24   1.7  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    23   3.1  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   4.0  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    22   7.0  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           21   9.3  

>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 32.7 bits (71), Expect = 0.004
 Identities = 16/60 (26%), Positives = 25/60 (41%)
 Frame = -1

Query: 193 SICFEQAAARSSADWAHPISAVLPMLWPQAAPTPEPGALSPISQHALYTRPVAPALPEPP 14
           S  F  + A+++  + H  + + P+  P     P P   SPI    +   P  P  P PP
Sbjct: 45  SYLFSLSLAQNNQLFTHHKAPIRPVALPPKREIPSPKRSSPILAEKVSVSPTTPPTPSPP 104


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = -1

Query: 127 LPMLWPQAAPTPEPGALSPISQHALYTRPVAPALPEPPYT 8
           + + WP AA   +P   + I   A  + P+    P P YT
Sbjct: 131 MAIAWPYAAVYTDPAFAASIFHAAATSLPLHYPPPPPVYT 170


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +3

Query: 381 VAILRAMPNLGIIYGNRDRESDGKMVFDVIQRMEDTEP 494
           +A L   P L I     +   DG +VF     +EDT P
Sbjct: 197 IAALFTSPILAITQYGPEEYVDGSIVFVCFSLVEDTLP 234


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 809 RKAMESNFFLLGIAARPRSEQF 744
           +K +  +F++   AARPRS QF
Sbjct: 176 KKNLYYSFYISDKAARPRSLQF 197


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -3

Query: 77  LTDLSACALHASCRSGTTGATLH 9
           L D S C   A+C+  TT  T H
Sbjct: 64  LCDSSPCLNGATCQDHTTHYTCH 86


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 130 LPKWGAPSRPKSVQRP 177
           +P + APS   +VQRP
Sbjct: 33  VPNFAAPSTSTAVQRP 48


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,069
Number of Sequences: 336
Number of extensions: 4859
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23451794
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)