Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30868
(850 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ... 60 3e-10
SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit... 54 3e-08
SPCPJ732.03 |meu15||sequence orphan|Schizosaccharomyces pombe|ch... 28 1.5
SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr... 28 1.9
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 28 1.9
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 27 2.5
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc... 27 3.4
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 4.4
SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter Ght7|Schizosa... 27 4.4
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|... 26 5.9
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 5.9
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 26 5.9
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 7.8
>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 60.5 bits (140), Expect = 3e-10
Identities = 27/65 (41%), Positives = 44/65 (67%)
Frame = +3
Query: 222 SGIKRHQAIVVGAGESGKSTIVKQMKIIHESGFTNEDFKQYRPVVYSNTIQSLVAILRAM 401
SG + +++GAG+SGK+TI+KQM++++ GF+ KQYR +++ N I SL +L AM
Sbjct: 70 SGGNDIKVLLLGAGDSGKTTIMKQMRLLYSPGFSQVVRKQYRVMIFENIISSLCLLLEAM 129
Query: 402 PNLGI 416
N +
Sbjct: 130 DNSNV 134
>SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit
Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 354
Score = 54.0 bits (124), Expect = 3e-08
Identities = 27/92 (29%), Positives = 57/92 (61%)
Frame = +3
Query: 141 GCAQSAEERAAACSKQIDR*ELEREWYSGIKRHQAIVVGAGESGKSTIVKQMKIIHESGF 320
G ++S E + + +I++ ++E K ++ +++GA +SGKSTI KQ+KI++++GF
Sbjct: 6 GLSESGESKKL--NSKIEK-QIENASKKDKKIYKVLLLGASDSGKSTISKQIKILNKNGF 62
Query: 321 TNEDFKQYRPVVYSNTIQSLVAILRAMPNLGI 416
+ E+ + PV+ N ++S +++ + GI
Sbjct: 63 SQEEIMTFIPVIRRNLLESAKTLVKIIVQKGI 94
>SPCPJ732.03 |meu15||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 150
Score = 28.3 bits (60), Expect = 1.5
Identities = 7/31 (22%), Positives = 19/31 (61%)
Frame = +2
Query: 215 MVFRHQKTSSYCCWCWRIGQEYYSQTDENYP 307
M++ + Y CWC+++ +++++ +N P
Sbjct: 78 MLYYELYLTLYVCWCYKLRSDFWNEAAKNRP 108
>SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 172
Score = 27.9 bits (59), Expect = 1.9
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 78 SAPGSGVGAACGHSIGRTAEMGCAQSAEERAAA 176
+A G G+G+A GH++G G + S A A
Sbjct: 64 TAAGVGIGSAIGHTVGSVITGGFSGSGSNNAPA 96
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.9 bits (59), Expect = 1.9
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +3
Query: 639 GLPAPPNKIILKDLEVKTTWNSSK*HFSFQK 731
GLPAP +IL+ ++ K W +S HF+ ++
Sbjct: 753 GLPAPIENMILRYVKSKADWWTSVAHFNRER 783
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 27.5 bits (58), Expect = 2.5
Identities = 16/64 (25%), Positives = 26/64 (40%)
Frame = -1
Query: 709 FDEFQVVLTSKSFRIILFGGAGNPLLPKPVRGRPGKYLAEVVELVLVGTTKALLNARVGP 530
FDE + KSF + PL+ V G+ K+ E + +++ K A +G
Sbjct: 109 FDEKTMAKDIKSFPFHIVNDKNRPLVEVNVGGKKKKFTPEEISAMILSKMKQTAEAYLGK 168
Query: 529 EPFH 518
H
Sbjct: 169 PVTH 172
>SPCP1E11.04c |pal1||membrane associated protein Pal1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 425
Score = 27.1 bits (57), Expect = 3.4
Identities = 18/63 (28%), Positives = 26/63 (41%)
Frame = +1
Query: 43 DACRAHAERSVRARPARESGRPAAIA*GELPKWGAPSRPKSVQRPARSKLIDKNLKENGI 222
DACR H R+ + P + P +PK G SV + K I ++L+ I
Sbjct: 184 DACRPHRNRNSKKAPV--AAFPKDSIANSIPKVGETYNDPSVPKDFSRKAIHESLRTKNI 241
Query: 223 QAS 231
S
Sbjct: 242 LQS 244
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.6 bits (56), Expect = 4.4
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Frame = -1
Query: 142 PISAVLPMLWPQAA--PTPEPGALSPISQHALYTRPVAPALPEPP 14
P S + P+ P A P P P P+ + ++ PV P PP
Sbjct: 1174 PSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPP 1218
>SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter
Ght7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 518
Score = 26.6 bits (56), Expect = 4.4
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -2
Query: 786 LPSRNRCPPTFGTIWKLKVFGRRN 715
+P C TFG I+ L+ FGRR+
Sbjct: 276 IPDAVNCGCTFGAIFVLEFFGRRS 299
>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 26.2 bits (55), Expect = 5.9
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +3
Query: 486 TEPFSEELSPR*KGSGPTLAFRSALVVPTSTNSTTSAKYFPGRPRTGLGS 635
++P + + P K GP FRS P + + ++A++ P P T GS
Sbjct: 293 SQPTTHDTHPP-KQQGPISDFRSIPSSPKTEGAPSNAQFRPSLPATPNGS 341
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.2 bits (55), Expect = 5.9
Identities = 14/43 (32%), Positives = 18/43 (41%)
Frame = +3
Query: 528 SGPTLAFRSALVVPTSTNSTTSAKYFPGRPRTGLGSKGLPAPP 656
S T S + PT +S+ S P P T S +P PP
Sbjct: 110 STSTSCTTSTSIPPTGGSSSLSTPITPTVPPTSTSSTSIPIPP 152
Score = 25.8 bits (54), Expect = 7.8
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +3
Query: 552 SALVVPTSTNSTTSAKYFPGRPRTGLGSKGLPAPP 656
S + PT +S+ S P P T S +P PP
Sbjct: 175 STSIPPTGGSSSLSTPITPTVPPTSTSSTSIPIPP 209
Score = 25.8 bits (54), Expect = 7.8
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +3
Query: 564 VPTSTNSTTSAKYFPGRPRTGLGSKGLPAPP 656
+PT +S+ S P P T S +P PP
Sbjct: 235 IPTGGSSSLSTPITPTVPPTSTSSTSIPIPP 265
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 26.2 bits (55), Expect = 5.9
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +3
Query: 435 RESDGKMVFDVIQRMEDTEPFSEELSP 515
R SDGK V+ + DTE S +LSP
Sbjct: 223 RLSDGKNVYGIASIKSDTEHDSVQLSP 249
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 7.8
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Frame = -1
Query: 127 LPMLWPQAAPTPEPGALS-PISQHALYTRPVAPALPEPP 14
LPM P A P P ++ P+ P+ PA P PP
Sbjct: 439 LPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPP 477
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,752,275
Number of Sequences: 5004
Number of extensions: 83935
Number of successful extensions: 301
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 270
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 301
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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