Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30868
         (850 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.6  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   6.2  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   6.2  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   6.2  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   6.2  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 23/110 (20%), Positives = 39/110 (35%)
 Frame = +3

Query: 414 IIYGNRDRESDGKMVFDVIQRMEDTEPFSEELSPR*KGSGPTLAFRSALVVPTSTNSTTS 593
           +IYG        K+    ++R  D    S    P   G+  T    +   + T+T +TT+
Sbjct: 615 VIYGIPRSTLRNKVYKLAMERERDASLSSTHSHPHEPGAPAT----TITTITTTTTTTTT 670

Query: 594 AKYFPGRPRTGLGSKGLPAPPNKIILKDLEVKTTWNSSK*HFSFQKPSIS 743
                  P T   +     PP    + D E+       +   +  KP +S
Sbjct: 671 TTTTTTTPNTTQNASATTPPPQVDEVDDKELSGAEEEKEVEKALLKPLLS 720


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -1

Query: 802 QWNPISSFSESLPAHVRNNL 743
           QWN +  + E +P+H+   L
Sbjct: 626 QWNWVYEWKELIPSHIMAGL 645


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -3

Query: 845 TTGILIRRVKVPRKAMESNFFLLGIAARPRSEQFGN 738
           TT  LIR+  +P++ ++ +     I    R+E  G+
Sbjct: 287 TTDTLIRKYIIPKEQVKEDSLYTNIVVDIRNEDCGS 322



 Score = 21.8 bits (44), Expect = 8.2
 Identities = 12/47 (25%), Positives = 20/47 (42%)
 Frame = +2

Query: 149 PVGRRACSGLLEAN*SIRT*KRMVFRHQKTSSYCCWCWRIGQEYYSQ 289
           P+GR        ++ S+     ++F +  T     WCW   +EY  Q
Sbjct: 424 PIGRPRAKDYGHSSGSVIDRNGVMFFNMVTRD-SVWCWDTRKEYIPQ 469


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 252 VGAGESGKSTIVKQMKIIHESGFTNE 329
           +G    GKSTIVK +  +    F NE
Sbjct: 48  IGHVAHGKSTIVKAISGVQTVRFKNE 73


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +1

Query: 4   ISCRVAPVVPERQDACRAHAERSVR 78
           ISCR   V  E   ACR   E  +R
Sbjct: 627 ISCRQGTVPDETHSACRDIPEEFLR 651


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 257,524
Number of Sequences: 438
Number of extensions: 6095
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27309825
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)