Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30867
         (743 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC320.13c |ark1|aim1, SPCC330.16|aurora-B kinase Ark1|Schizosa...    29   0.92 
SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomy...    26   4.9  
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo...    26   6.5  
SPAC869.10c |||proline specific permease |Schizosaccharomyces po...    25   8.6  

>SPCC320.13c |ark1|aim1, SPCC330.16|aurora-B kinase
           Ark1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 355

 Score = 28.7 bits (61), Expect = 0.92
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +2

Query: 11  IIFFFNKLHKHKRIYLIINYAISIYRLKSCYNSKNFVQELLFKSTFQ 151
           I+  +   H  KRIYLI+ +A      +    +K F +E+  K  FQ
Sbjct: 149 ILRLYGHFHDEKRIYLILEFAGRGELYQHLRRAKRFSEEVASKYIFQ 195


>SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 537

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
 Frame = -1

Query: 359 GFHFLGWYKEVLYCQCLYEVFYWQK--LLNLPI 267
           GF+ L W     +   LY   YWQ+  LL LP+
Sbjct: 100 GFYVLFWLSMAAWVLQLYARSYWQRDTLLGLPL 132


>SPCC126.09 |||vacuolar membrane zinc transporter
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 418

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 249 YHTLLVKVFQAAL*YSDQCVFYFYLHFV 166
           + T LV+VFQ    +    VFY + HF+
Sbjct: 110 FDTFLVRVFQFCAFFFGGIVFYIFNHFL 137


>SPAC869.10c |||proline specific permease |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 552

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 10/39 (25%), Positives = 18/39 (46%)
 Frame = -2

Query: 529 SVFIFVGAFKGSSLFSISSQWYIPSRSYKVIILFHCSIF 413
           S++      +   +F   ++W +P  S  V +LF C  F
Sbjct: 359 SIYSLAKEHQAPKIFKYCNRWGVPVISVAVTVLFACLAF 397


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,082,896
Number of Sequences: 5004
Number of extensions: 67594
Number of successful extensions: 168
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)