Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30867
         (743 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54629| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     30   1.7  
SB_42197| Best HMM Match : rve (HMM E-Value=0.017)                     28   9.2  

>SB_54629| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1296

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +3

Query: 147 SKPVSTVQNEDKNKIRIDPSTITLLERLSLVKYDTP 254
           SK  S  + E K  +RI+P+   +    SLVKYD P
Sbjct: 17  SKSRSAPKQETKTLLRINPNFTMIPPNASLVKYDNP 52


>SB_42197| Best HMM Match : rve (HMM E-Value=0.017)
          Length = 602

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -1

Query: 647 QHGYFPLIP*LGFNKVKINSCCIIINHVKRIFS 549
           Q+  FP+I  LG + V   +  ++INH+K IFS
Sbjct: 520 QYSKFPIIRKLG-SAVGSTTSLVVINHLKSIFS 551


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,380,415
Number of Sequences: 59808
Number of extensions: 434966
Number of successful extensions: 868
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)