Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30867
         (743 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g19760.1 68418.m02349 dicarboxylate/tricarboxylate carrier (D...    29   4.3  
At4g21540.1 68417.m03112 diacylglycerol kinase family protein co...    27   9.9  
At3g47580.1 68416.m05180 leucine-rich repeat transmembrane prote...    27   9.9  
At3g13590.1 68416.m01711 DC1 domain-containing protein contains ...    27   9.9  
At2g31880.1 68415.m03895 leucine-rich repeat transmembrane prote...    27   9.9  

>At5g19760.1 68418.m02349 dicarboxylate/tricarboxylate carrier (DTC)
           identical to dicarboxylate/tricarboxylate carrier
           [Arabidopsis thaliana] GI:19913113
          Length = 298

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 684 PVFCPNVDPGANSTWIFSINTLTRF 610
           PV+C  + P    TWIF +N +T+F
Sbjct: 269 PVYCVRIAPHVMMTWIF-LNQITKF 292


>At4g21540.1 68417.m03112 diacylglycerol kinase family protein
            contains INTERPRO domain, IPR001206, DAG-kinase catalytic
            domain
          Length = 1240

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +1

Query: 76   FDLSP*IVLQLKEFCPRIIVQKYLPSLSVQYKMKIKIK-YALIRVL*RCLKDFH 234
            FD+   +V  LK FC      +Y   L V+ + K K K   L R++  CL+ +H
Sbjct: 1050 FDIYVCLVEHLKIFCNACFNMRYSTKLLVEVEQKKKKKEIGLQRII--CLRQYH 1101


>At3g47580.1 68416.m05180 leucine-rich repeat transmembrane protein
           kinase, putative protein kinase Xa21 - Oryza sativa,
           PIR:A57676
          Length = 1011

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = +3

Query: 174 EDKNKIRIDPSTITLLERLSLV 239
           E+  +IR  P T+TLLERL++V
Sbjct: 797 EEVEEIRRPPRTLTLLERLNIV 818


>At3g13590.1 68416.m01711 DC1 domain-containing protein contains
           Pfam protein PF03107 DC1 domain
          Length = 513

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 20  FFNKLHKHKRIYLIINYAISIYRLKSCYNSKNF 118
           F + +HKH  +YL I +   IYR + C  S  F
Sbjct: 340 FDHSMHKHP-LYLAIYFDEFIYRCEGCTQSSRF 371


>At2g31880.1 68415.m03895 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 641

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 664 HIRAEHRNHMPVYLELTRPFCGYVGY 741
           HIR  HRN +P+   ++RP C Y+ Y
Sbjct: 413 HIR--HRNLLPLLAHVSRPECHYLVY 436


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,291,680
Number of Sequences: 28952
Number of extensions: 319571
Number of successful extensions: 636
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)