Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30866
         (878 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0172 + 26460884-26461084,26461168-26461391,26461726-264617...    29   3.7  
02_02_0454 + 10436491-10436820,10437487-10437570,10437667-104377...    29   3.7  
05_04_0247 + 19358929-19359187,19360439-19360639,19361426-193615...    29   4.9  

>02_05_0172 +
           26460884-26461084,26461168-26461391,26461726-26461756,
           26462247-26462834
          Length = 347

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 343 QEEATSLLHYCEITTALQALSQGGTLIFKLFT 438
           Q   TSLL YC   T +   S+GG ++ +L T
Sbjct: 169 QSPTTSLLKYCPPKTVILGFSKGGVVVNQLVT 200


>02_02_0454 +
           10436491-10436820,10437487-10437570,10437667-10437797,
           10437873-10437948,10438366-10438436,10438559-10438645,
           10438725-10438797,10438881-10438948,10439020-10439088,
           10439160-10439265,10439831-10439887,10440297-10440389
          Length = 414

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +3

Query: 549 VCLNYKGMSILEKFTPVLMSAYGNGT-IWEILSLFRLDDIPDNIFEGKSKECA 704
           VCL Y  +S   + T V + A   G    ++LSLF +  + D   E  SK C+
Sbjct: 298 VCLTYLNLSWCVRVTDVGVVAIAQGCRSLQLLSLFGIVGVTDVCLEALSKHCS 350


>05_04_0247 +
           19358929-19359187,19360439-19360639,19361426-19361592,
           19361819-19362089,19362550-19362818
          Length = 388

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
 Frame = +1

Query: 634 KFYHYSDLMTSQI----TFLKANPRSAHVTLVQYNVQLSNNNLAGHY*W--QD*LSGSTP 795
           +F+ + D +T  +    T+ +  P+S + +   Y   +  N+LAG + W  +D ++ S P
Sbjct: 139 QFFAFKDKVTKLLSKGDTYRRYIPQSDYFSRGLYTFDIGQNDLAGEFYWKTEDQVAASIP 198

Query: 796 EIIKE 810
            I+ E
Sbjct: 199 TILLE 203


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,019,062
Number of Sequences: 37544
Number of extensions: 545317
Number of successful extensions: 1076
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1076
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)