Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30866
         (878 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22196| Best HMM Match : FtsJ (HMM E-Value=3.6e-25)                 122   5e-28
SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.)               38   0.008
SB_34817| Best HMM Match : PP-binding (HMM E-Value=7.6)                30   2.1  
SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.)                30   2.8  
SB_6324| Best HMM Match : MCM (HMM E-Value=0)                          29   5.0  
SB_5182| Best HMM Match : TSP_1 (HMM E-Value=1.1e-11)                  29   6.6  
SB_19025| Best HMM Match : Keratin_B2 (HMM E-Value=1.3)                28   8.7  
SB_5268| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.7  
SB_11430| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  

>SB_22196| Best HMM Match : FtsJ (HMM E-Value=3.6e-25)
          Length = 941

 Score =  122 bits (293), Expect = 5e-28
 Identities = 46/82 (56%), Positives = 62/82 (75%)
 Frame = +2

Query: 5   SERKMVSLHLCEAPGAFITSLNHYLKLNHPGIQWTWVANTLNPYYEGNSPSSMISDDRFM 184
           S +K+  +HLCEAPGAF+ + NHYL+ +HP ++W W+  TLNPYYEG+SP +++ DDRF+
Sbjct: 139 SSKKLYGVHLCEAPGAFVAATNHYLRNHHPDLEWAWLGATLNPYYEGHSPKALLDDDRFI 198

Query: 185 FHTLDNWHFGVDNTGNLMDWEN 250
             TL NW FG D TG+LM  EN
Sbjct: 199 VETLQNWDFGADGTGDLMQLEN 220



 Score = 86.2 bits (204), Expect = 3e-17
 Identities = 41/74 (55%), Positives = 50/74 (67%)
 Frame = +1

Query: 283 GKVMLVTADGSIDCLQAPDAQEEATSLLHYCEITTALQALSQGGTLIFKLFTIFEHSTVS 462
           GKV LVTADGSIDC   P+ QE A S L +CE  TAL  L+ GG  +FK+FT  EH  V 
Sbjct: 230 GKVHLVTADGSIDCSDEPEEQENAVSQLIFCEAVTALTVLATGGCYVFKMFTTLEHHMVC 289

Query: 463 LLYLINHLFSEVNI 504
           L+YL+  LF EV++
Sbjct: 290 LMYLMCCLFEEVHV 303



 Score = 45.2 bits (102), Expect = 7e-05
 Identities = 28/74 (37%), Positives = 42/74 (56%)
 Frame = +3

Query: 504 LQPVTSRQGNSEVYAVCLNYKGMSILEKFTPVLMSAYGNGTIWEILSLFRLDDIPDNIFE 683
           ++P TS+ GNSEVY  C  Y G ++  ++  +L +AY   T  ++  LF L+ IP   F 
Sbjct: 304 IKPGTSKGGNSEVYITCCGYTG-NLSPQYHEILYTAYQQDTAEKV--LFPLNSIPRE-FL 359

Query: 684 GKSKECACYFGSIQ 725
              KEC  YF ++Q
Sbjct: 360 YLIKECQEYFINLQ 373



 Score = 38.3 bits (85), Expect = 0.008
 Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
 Frame = +1

Query: 289 VMLVTADGSID--CLQAPDAQEEATSLLHYCEITTALQALSQGGTLIFKLFTIFEHSTVS 462
           V L+ +  S D   L+ P        LL  C    AL+ LS GGT + ++F      +V 
Sbjct: 708 VSLIGSRASADQASLREPKELLNKKQLLQQCVF--ALRNLSTGGTFVCQVFDTLTRFSVG 765

Query: 463 LLYLINHLFSEVNI 504
           L+Y++++LFS V I
Sbjct: 766 LIYILHYLFSRVAI 779


>SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3297

 Score = 38.3 bits (85), Expect = 0.008
 Identities = 18/55 (32%), Positives = 30/55 (54%)
 Frame = +1

Query: 343 QEEATSLLHYCEITTALQALSQGGTLIFKLFTIFEHSTVSLLYLINHLFSEVNIY 507
           QE  +  L+ C+   A+  L  GG  + K+F +F   ++ L+YL+   F EV I+
Sbjct: 289 QEILSKQLYLCQFLMAILILRTGGHFLCKVFDLFTPFSIGLVYLMYRAFDEVCIF 343


>SB_34817| Best HMM Match : PP-binding (HMM E-Value=7.6)
          Length = 170

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 619 TELYGKFYHYSDLMTSQITFLKANPRSAHVTLVQYN 726
           + L G F    +  TS + F K N R AH+ +V+Y+
Sbjct: 100 SSLEGDFKKIKNTFTSLLKFFKVNNRKAHLGIVEYS 135


>SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2323

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 197 DNWHFGVDNTGNLMDWENSQP 259
           D WH G+   GN  +W N +P
Sbjct: 409 DEWHIGLKQNGNSWNWVNGKP 429


>SB_6324| Best HMM Match : MCM (HMM E-Value=0)
          Length = 1592

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = -1

Query: 461 LTVLCSKIVKSLNIKVPPWLNACRAVVISQ*CN-RDVASSCASGACRQSMEPSAVTNITF 285
           L  LC  + K L +  P  L     + +   C+ R V  + +SG C+Q+  P    + TF
Sbjct: 426 LYTLCRPLCKQLAVHCPDLLQTPSYIRVISECDIRTVDGNSSSGFCKQTKWPPPYHHGTF 485

Query: 284 PRDFA 270
             D A
Sbjct: 486 IVDLA 490


>SB_5182| Best HMM Match : TSP_1 (HMM E-Value=1.1e-11)
          Length = 1417

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 15/34 (44%), Positives = 16/34 (47%)
 Frame = +2

Query: 179 FMFHTLDNWHFGVDNTGNLMDWENSQPSLEKRNP 280
           + F   DN    VD T    DWE    SLEKR P
Sbjct: 739 YTFLATDNSQTAVDLTKKFDDWEYDYWSLEKRMP 772


>SB_19025| Best HMM Match : Keratin_B2 (HMM E-Value=1.3)
          Length = 227

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -1

Query: 344 CASGACRQSMEPSAVTNITFPRDFAFLMMA 255
           C  G CR+       T +T+P+ F  L+ A
Sbjct: 114 CRKGECRREKTEEYTTRVTYPKKFLVLLAA 143


>SB_5268| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 108

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 176 RFMFHTLDNWHFGVDNTGNLMDWENSQPSLEKR 274
           RF F  +  WHFG  N G L  W +  P  ++R
Sbjct: 27  RFTFSPV-GWHFGEINLGPLGLWHHKSPLSQRR 58


>SB_11430| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 474

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = -1

Query: 365 NRDVASSCASGACRQSMEPSAVTNITFPRDFAFLMMAVNFPNPLSY-QYCLPQNASY 198
           N  + SSC        M  +A  ++++PR F    M+ N    LSY +Y    N SY
Sbjct: 386 NATLDSSCPRYYTSYDMSYNATLDLSYPRYFTSYNMSYNAKLDLSYPRYYTSYNMSY 442


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,245,007
Number of Sequences: 59808
Number of extensions: 640253
Number of successful extensions: 1340
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1339
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2502612210
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)