Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30866
         (878 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF078792-4|AAN84813.1|  261|Caenorhabditis elegans Hypothetical ...    62   4e-10
AF078792-3|AAC26945.2|  635|Caenorhabditis elegans Hypothetical ...    62   4e-10
AL132949-11|CAB70104.2|  927|Caenorhabditis elegans Hypothetical...    46   4e-05
Z98877-2|CAB11570.1|  907|Caenorhabditis elegans Hypothetical pr...    29   5.8  

>AF078792-4|AAN84813.1|  261|Caenorhabditis elegans Hypothetical
           protein Y40D12A.1b protein.
          Length = 261

 Score = 62.5 bits (145), Expect = 4e-10
 Identities = 30/75 (40%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
 Frame = +2

Query: 23  SLHLCEAPGAFITSLNHYLKL----NHPGIQWTWVANTLNPYYEGNSPSSMISDDRFMFH 190
           S HLCE PG FI +++  L      N     W W ANTLNPY+E  S    + DD  +  
Sbjct: 124 SFHLCEGPGYFIEAVHVALMRSRGKNEEMSYWKWGANTLNPYFENRSCFDKLIDDSHIRP 183

Query: 191 TLDNWHFGVDNTGNL 235
           T+D W+FG  + G++
Sbjct: 184 TMDQWYFGPSDDGDI 198


>AF078792-3|AAC26945.2|  635|Caenorhabditis elegans Hypothetical
           protein Y40D12A.1a protein.
          Length = 635

 Score = 62.5 bits (145), Expect = 4e-10
 Identities = 30/75 (40%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
 Frame = +2

Query: 23  SLHLCEAPGAFITSLNHYLKL----NHPGIQWTWVANTLNPYYEGNSPSSMISDDRFMFH 190
           S HLCE PG FI +++  L      N     W W ANTLNPY+E  S    + DD  +  
Sbjct: 124 SFHLCEGPGYFIEAVHVALMRSRGKNEEMSYWKWGANTLNPYFENRSCFDKLIDDSHIRP 183

Query: 191 TLDNWHFGVDNTGNL 235
           T+D W+FG  + G++
Sbjct: 184 TMDQWYFGPSDDGDI 198



 Score = 39.9 bits (89), Expect = 0.002
 Identities = 29/85 (34%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
 Frame = +1

Query: 247 KFTA-IIRKAKSLGKVMLVTADGSIDCLQAPDAQEEATSLLHYCEITTALQALSQGGTLI 423
           KFT   + K K  G   LVTADGS +        E   S L   E+  AL+ L + G LI
Sbjct: 200 KFTEEYLIKQKLAGTFDLVTADGSTNTQGKEGEIESIVSSLISAEVEVALKLLRRNGRLI 259

Query: 424 FKLFTIFEHSTVSLLYLINHLFSEV 498
            K +     ST  ++ L+   FS +
Sbjct: 260 LKTYRFCAKSTRDVMNLLADNFSSI 284


>AL132949-11|CAB70104.2|  927|Caenorhabditis elegans Hypothetical
           protein Y53F4B.13 protein.
          Length = 927

 Score = 46.0 bits (104), Expect = 4e-05
 Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
 Frame = +1

Query: 259 IIRKAKSLGKVMLVTADGSIDCLQAPDAQEEATSLLHYCEITTALQALSQGGTLIFKLFT 438
           I R    LG V L+ ADG        + QE  +  L+ C++  +L  + +GG    KLF 
Sbjct: 364 ISRGTSGLG-VHLMMADGGFSVEGQENIQEILSKRLYLCQLLVSLCIVREGGNFFCKLFD 422

Query: 439 IFEHSTVSLLYLINHLFSEVNIYN-RSPRDRATLKCMQCA*IIKE 570
           IF   +V L+YL+   +  V+++   + R   + + + C  + KE
Sbjct: 423 IFTPFSVGLIYLMRVCYQSVSLHKPHTSRPANSERYITCKGLRKE 467


>Z98877-2|CAB11570.1|  907|Caenorhabditis elegans Hypothetical
           protein Y69H2.2 protein.
          Length = 907

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = -1

Query: 419 KVPPWLNACRAVVISQ*CNRDVASSCASGACRQSMEPSAVTNIT 288
           K+  +   C+A    + C+ ++ S+CA+  CR+     A  N T
Sbjct: 85  KIESYDCTCQAGFTGEKCDSEIGSACATSQCREGSTCEASDNST 128


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,535,518
Number of Sequences: 27780
Number of extensions: 482982
Number of successful extensions: 1089
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1038
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1086
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)