Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30866
         (878 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          24   2.1  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      24   2.1  
DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.              23   2.8  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              23   2.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.8  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    23   2.8  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    23   4.9  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   8.6  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 15/54 (27%), Positives = 23/54 (42%)
 Frame = +2

Query: 125 LNPYYEGNSPSSMISDDRFMFHTLDNWHFGVDNTGNLMDWENSQPSLEKRNPLE 286
           + P Y+ +     I +D   F+ +DNW   + N+G      NS       N LE
Sbjct: 520 IGPKYDSHHKLIEIPEDLKYFYEIDNWMLDL-NSGLNKITRNSLDCFFTMNDLE 572


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 15/54 (27%), Positives = 23/54 (42%)
 Frame = +2

Query: 125 LNPYYEGNSPSSMISDDRFMFHTLDNWHFGVDNTGNLMDWENSQPSLEKRNPLE 286
           + P Y+ +     I +D   F+ +DNW   + N+G      NS       N LE
Sbjct: 520 IGPKYDSHHKLIEIPEDLKYFYEIDNWMLDL-NSGLNKITRNSLDCFFTMNDLE 572


>DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.
          Length = 132

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +3

Query: 639 LSLFRLDDIPDNIFEGKSKECACY 710
           + L + DD+   IF+   ++ ACY
Sbjct: 39  IDLKKADDVKKGIFDKNDEKLACY 62


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 7/31 (22%), Positives = 16/31 (51%)
 Frame = -1

Query: 368 CNRDVASSCASGACRQSMEPSAVTNITFPRD 276
           C+ D++ +   G C   ++PS  +   F ++
Sbjct: 60  CSGDISVTKCEGFCNSQVQPSVASTTGFSKE 90


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 5/17 (29%), Positives = 13/17 (76%)
 Frame = -1

Query: 713 KVTCALLGFAFKNVIWD 663
           +VTC + G+  ++++W+
Sbjct: 509 RVTCPVAGYPIESIVWE 525


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 7/31 (22%), Positives = 16/31 (51%)
 Frame = -1

Query: 368 CNRDVASSCASGACRQSMEPSAVTNITFPRD 276
           C+ D++ +   G C   ++PS  +   F ++
Sbjct: 60  CSGDISVTKCEGFCNSQVQPSVASTTGFSKE 90


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = -2

Query: 661 SSSRNNDKISHIVPFPYADMSTGVNFSSIDIPL*FKHTAYTSELPCLEVTG 509
           +S  +N+++  I      D    +NF + DIP   +H    S +   E+ G
Sbjct: 83  TSKNDNEEVCGIYFLAEPDQKIEINFITFDIPC--EHRGLVSIIDGWELNG 131


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +3

Query: 597 VLMSAYGNGTIWEILSLFRLDDIPDNIF 680
           +L   Y N T WEI+ +   +   D+ F
Sbjct: 197 ILDDMYNNNTEWEIVHMSHSESTIDSKF 224


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 263,352
Number of Sequences: 438
Number of extensions: 5976
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)