Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30866
         (878 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g01230.1 68418.m00029 FtsJ-like methyltransferase family prot...    31   1.3  
At5g13370.1 68418.m01540 auxin-responsive GH3 family protein sim...    29   3.1  
At1g12750.1 68414.m01480 rhomboid family protein contains PFAM d...    29   4.1  
At3g15530.2 68416.m01969 expressed protein                             28   7.2  
At3g15530.1 68416.m01968 expressed protein                             28   7.2  
At5g24080.1 68418.m02828 protein kinase family protein contains ...    28   9.5  
At3g47570.1 68416.m05179 leucine-rich repeat transmembrane prote...    28   9.5  

>At5g01230.1 68418.m00029 FtsJ-like methyltransferase family protein
           contains Pfam profile: PF01728 FtsJ-like
           methyltransferase
          Length = 309

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 24/68 (35%), Positives = 27/68 (39%)
 Frame = +1

Query: 286 KVMLVTADGSIDCLQAPDAQEEATSLLHYCEITTALQALSQGGTLIFKLFTIFEHSTVSL 465
           K  LV  DG+ D     D  E   S L    +T     L +GG  I K   IF     SL
Sbjct: 119 KADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTIVTHILKEGGKFIAK---IFRGKDTSL 175

Query: 466 LYLINHLF 489
           LY    LF
Sbjct: 176 LYCQLKLF 183


>At5g13370.1 68418.m01540 auxin-responsive GH3 family protein
           similar to auxin-responsive GH3 product [Glycine max]
           GI:18591; contains Pfam profile PF03321: GH3
           auxin-responsive promoter
          Length = 595

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = -2

Query: 691 DLPSKMLSGMSSSRNNDKISHIVPFPYADMSTGVNFSSIDIPL*FKHTAYTSE 533
           D P  +L  ++SS  +  +  ++P    D+   ++FSS+  PL +KH    SE
Sbjct: 88  DRPISVL--LTSSGTSGGVPKLIPLTTEDLEQRISFSSLYAPLLYKHIDGLSE 138


>At1g12750.1 68414.m01480 rhomboid family protein contains PFAM
           domain PF01694, Rhomboid family
          Length = 307

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/21 (61%), Positives = 16/21 (76%)
 Frame = -1

Query: 743 LLDNWTLY*TKVTCALLGFAF 681
           LL NWT+Y +K+ CALL F F
Sbjct: 178 LLTNWTIYKSKL-CALLSFLF 197


>At3g15530.2 68416.m01969 expressed protein
          Length = 288

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +1

Query: 388 ALQALSQGGTLIFKLFTIFEHSTVSLLYLI 477
           A+  + Q  TL+F LF  F  S +SLL+LI
Sbjct: 15  AIYGIEQWQTLVFLLFHAFFFSLLSLLFLI 44


>At3g15530.1 68416.m01968 expressed protein
          Length = 288

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +1

Query: 388 ALQALSQGGTLIFKLFTIFEHSTVSLLYLI 477
           A+  + Q  TL+F LF  F  S +SLL+LI
Sbjct: 15  AIYGIEQWQTLVFLLFHAFFFSLLSLLFLI 44


>At5g24080.1 68418.m02828 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 470

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 191 TLDNWHFGVDNTGNLMDW 244
           +LD W F  + T NL+DW
Sbjct: 208 SLDKWIFSSEQTANLLDW 225


>At3g47570.1 68416.m05179 leucine-rich repeat transmembrane protein
           kinase, putative protein kinase Xa21 - Oryza sativa,
           PIR:A57676
          Length = 1010

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 731 SYPIITWQGITNGRINYPALHRKL*R 808
           S+P+  W+G+T GR N    H +L R
Sbjct: 50  SFPLCNWKGVTCGRKNKRVTHLELGR 75


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,395,392
Number of Sequences: 28952
Number of extensions: 452623
Number of successful extensions: 973
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 972
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2067932800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)