Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30865
         (785 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|...   117   2e-27
SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein S3a|S...   116   5e-27
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    28   1.7  
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...    27   3.0  
SPCC330.08 |alg11|gmd3|alpha-1,2-mannosyltransferase Alg11|Schiz...    27   3.0  
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    27   3.0  
SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo...    27   4.0  
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ...    27   4.0  
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb...    27   4.0  
SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharom...    27   4.0  
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy...    25   9.3  
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    25   9.3  
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    25   9.3  
SPAC664.08c |||traub transciption factor family protein |Schizos...    25   9.3  

>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
           S3a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 252

 Score =  117 bits (281), Expect = 2e-27
 Identities = 54/124 (43%), Positives = 85/124 (68%)
 Frame = +2

Query: 263 DAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVL 442
           D E +FRK +L  E +QG++ L +F+G+ +T+DKLR +V+KWQT IEA+  +KTTDGY+ 
Sbjct: 76  DEEHAFRKVKLRVEDIQGKSCLTSFNGLSITSDKLRSLVRKWQTTIEADQTIKTTDGYLC 135

Query: 443 RVFCIGFTNKDSLSQRKTCYAQTLRSEQSERKCVKSLHATSLTSELREVVNKLIPDSIAK 622
           RVF IGFT + +   +KT YAQ+ +     +K  + +   + +  +RE+V KLIP+ I +
Sbjct: 136 RVFVIGFTRRRANQVKKTTYAQSSQIRAIRQKMFQVIQNQTSSCSMRELVQKLIPEVIGR 195

Query: 623 DIEK 634
           +IE+
Sbjct: 196 EIER 199



 Score = 84.2 bits (199), Expect = 2e-17
 Identities = 36/55 (65%), Positives = 45/55 (81%)
 Frame = +3

Query: 90  IVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQ 254
           +VDPF+RK+WYD+KAP+ F  + VG TLVNRT G K A++ LKGR+ EVSLADLQ
Sbjct: 20  VVDPFSRKEWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVSLADLQ 74


>SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein
           S3a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 252

 Score =  116 bits (278), Expect = 5e-27
 Identities = 55/124 (44%), Positives = 83/124 (66%)
 Frame = +2

Query: 263 DAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVL 442
           D E SFRK +L  E +QG++ L +F+G D+T+DKLR +V+KWQ+ IEAN  +KTTDGY+ 
Sbjct: 76  DEEHSFRKVKLRVEDIQGKSCLTSFNGFDMTSDKLRSLVRKWQSTIEANQTIKTTDGYLC 135

Query: 443 RVFCIGFTNKDSLSQRKTCYAQTLRSEQSERKCVKSLHATSLTSELREVVNKLIPDSIAK 622
           R+F IGFT++     +KT YAQ+ +     +K  + +   +    ++E+V KLIP+ I +
Sbjct: 136 RIFVIGFTSRRVNQVKKTTYAQSSQIRAIHQKMFQVIQNQANGCSMKELVQKLIPEVIGR 195

Query: 623 DIEK 634
            IEK
Sbjct: 196 AIEK 199



 Score = 85.8 bits (203), Expect = 6e-18
 Identities = 37/55 (67%), Positives = 45/55 (81%)
 Frame = +3

Query: 90  IVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQ 254
           +VDPF+RKDWYD+KAP+ F  + VG TLVNRT G K A++ LKGR+ EVSLADLQ
Sbjct: 20  VVDPFSRKDWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVSLADLQ 74


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 4924

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = -2

Query: 718 SRNGGLLQDFSPFRRQTSRQRVRCPWQALLD---VLGNG 611
           S NG L  + + F+   S ++V+  W+ LLD   +L NG
Sbjct: 818 SNNGNLYFNHTVFKIAASPEKVKLAWEKLLDTHTILSNG 856


>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 882

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 18/69 (26%), Positives = 30/69 (43%)
 Frame = +2

Query: 368 RWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQTLRSEQSERKCVK 547
           ++    W  L+       T  GYV+R    GFT+  ++ + K  +A    ++  ER   +
Sbjct: 795 KFATSNWDKLLSRLPVAGTMRGYVVRFVTSGFTHASAIDKIKEFFADK-DTKLYERALQQ 853

Query: 548 SLHATSLTS 574
           SL   S  S
Sbjct: 854 SLDTISANS 862


>SPCC330.08 |alg11|gmd3|alpha-1,2-mannosyltransferase
           Alg11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 471

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +1

Query: 700 GGPRFEILRNWIGNFTG 750
           GGP+F+I+  WIG  TG
Sbjct: 393 GGPKFDIVIPWIGKPTG 409


>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = -3

Query: 633 FSMSLAMESGINLFTTSLSSEVSDVACNDFTHFLSDCSDLSV 508
           FS SL ++S   +FT  L+S V   +CN+ T+      DLS+
Sbjct: 517 FSSSLVIKS---IFTGRLTSVVMCQSCNEITNTPEPIQDLSI 555


>SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 509

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -2

Query: 649 CPWQALLDVLGNGVRNQLVHHLPEFR 572
           CPWQ  L  +G G  +Q ++    FR
Sbjct: 340 CPWQKSLLAVGTGSNDQQIYFYDTFR 365


>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 308

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +2

Query: 296 IAEYVQGRNVLCNFHGMDLTTDKLRWMV--KKWQTLIEANIDVKTT 427
           +A   Q R V C  H MDL  + LR +V  ++   L+E + D++TT
Sbjct: 109 VANSPQAR-VFCLIHKMDLVQEDLRDLVFEERKAILLETSKDLETT 153


>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 391 LPFFNHPPELIGCEVHAVEVAEHITS 314
           L    H PEL+ C     +VA+H+TS
Sbjct: 181 LQSMGHSPELVQCITCLPDVADHLTS 206


>SPAC3C7.09 |set8||lysine methyltransferase Set8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 429

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
 Frame = +2

Query: 428 DGYVLRVFCIGFTNKDSL--SQRKTCYAQT-LRSEQSERKCVKSLHATSLTSELREVVNK 598
           D Y+LRVFC+     D+   +  +  Y  T  RSE  E    +S     +   LR+V++K
Sbjct: 352 DLYILRVFCLAEQLADAALNTNIENMYNPTERRSESVELLKRESFLLKKVLLYLRDVISK 411

Query: 599 LIPDSI 616
           L+   +
Sbjct: 412 LLKSKV 417


>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1019

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 1/78 (1%)
 Frame = +2

Query: 263 DAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIE-ANIDVKTTDGYV 439
           DAE + + F  I EY++  N        D T  K    + +W ++ E    +    D  +
Sbjct: 111 DAEENKKLFEKIIEYIRATNKKVGVFPKDKTQGK---FINEWDSIFEPVKSEFNLVDASL 167

Query: 440 LRVFCIGFTNKDSLSQRK 493
               C+   ++  L+  K
Sbjct: 168 GLAKCLAIKDEQELANIK 185


>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
            protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -2

Query: 268  RVSVSCRSARETSKTLPFNPSEAIFVPWVRLTSVVPTCLLLN 143
            +V + CR   E S+ +   P E IF    +L+  +  C L+N
Sbjct: 896  QVDLQCRYLHELSEFIKKIPKEFIFHTICKLSKGLIPCFLMN 937


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 449 FCIGFTNKDSLSQRKTCYAQTLRSEQS 529
           FC G  NKD++   K C+   + S  S
Sbjct: 475 FCDGIVNKDTVMTSKACFVGNIVSMAS 501


>SPAC664.08c |||traub transciption factor family protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 452

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +2

Query: 347 DLTTD-KLRWMVKKWQTLIEANIDVKTTDGYVLR 445
           D T D  +RWM  K Q   + N+D K + G  +R
Sbjct: 351 DSTRDGTVRWMATKKQKQKKENVDTKASKGRKIR 384


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,424,595
Number of Sequences: 5004
Number of extensions: 74304
Number of successful extensions: 211
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)