Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30865
(785 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0043 + 5242496-5242554,5242673-5242778,5243586-5243723,524... 147 8e-36
02_02_0482 - 10819562-10819813,10820773-10820952,10822073-108221... 147 8e-36
12_02_0012 - 12309332-12310228,12311087-12311669,12311945-123120... 144 5e-35
09_02_0094 + 4196729-4197571 32 0.59
07_03_0169 + 14670994-14673714,14673799-14673879,14675460-146756... 29 3.2
01_07_0288 + 42534552-42534558,42535302-42537280,42537367-425375... 29 4.2
06_03_0290 - 19193707-19193752,19193822-19194090 28 7.3
03_05_0791 + 27736978-27737217,27737648-27739191,27739512-277397... 28 9.7
>03_02_0043 +
5242496-5242554,5242673-5242778,5243586-5243723,
5243794-5243979,5244075-5244275,5244362-5244460
Length = 262
Score = 147 bits (357), Expect = 8e-36
Identities = 69/124 (55%), Positives = 93/124 (75%)
Frame = +2
Query: 263 DAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVL 442
D ++++RK RL AE VQG+NVL NF GM TTDKLR +VKKWQTLIEA++DVKTTDGY+L
Sbjct: 76 DEDQAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDGYML 135
Query: 443 RVFCIGFTNKDSLSQRKTCYAQTLRSEQSERKCVKSLHATSLTSELREVVNKLIPDSIAK 622
R+FCIGFT + ++TCYAQ + Q RK V+ + + + +L+E+V+K IP+ I K
Sbjct: 136 RLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQASSCDLKELVSKFIPEVIGK 195
Query: 623 DIEK 634
+IEK
Sbjct: 196 EIEK 199
Score = 95.9 bits (228), Expect = 3e-20
Identities = 43/54 (79%), Positives = 49/54 (90%)
Frame = +3
Query: 93 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQ 254
VDPF +KDWYD+KAPS+F+ R +G TLV+RTQGTKIASEGLK RVFEVSLADLQ
Sbjct: 21 VDPFAKKDWYDIKAPSVFNVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQ 74
>02_02_0482 -
10819562-10819813,10820773-10820952,10822073-10822150,
10823056-10823256,10823365-10823550,10823646-10823783,
10824396-10824501,10824634-10824692
Length = 399
Score = 147 bits (357), Expect = 8e-36
Identities = 70/124 (56%), Positives = 92/124 (74%)
Frame = +2
Query: 263 DAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVL 442
D ++++RK RL AE VQGRNVL NF GM TTDKLR +VKKWQTLIEA++DVKTTD Y+L
Sbjct: 76 DEDQAYRKVRLRAEDVQGRNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDNYML 135
Query: 443 RVFCIGFTNKDSLSQRKTCYAQTLRSEQSERKCVKSLHATSLTSELREVVNKLIPDSIAK 622
R+FCIGFT + ++TCYAQ + Q RK V+ + + T +L+E+V+K IP+ I K
Sbjct: 136 RLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQASTCDLKELVSKFIPEVIGK 195
Query: 623 DIEK 634
+IEK
Sbjct: 196 EIEK 199
Score = 96.3 bits (229), Expect = 2e-20
Identities = 43/54 (79%), Positives = 50/54 (92%)
Frame = +3
Query: 93 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQ 254
VDPF++KDWYD+KAP++FS R +G TLV+RTQGTKIASEGLK RVFEVSLADLQ
Sbjct: 21 VDPFSKKDWYDIKAPTVFSVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQ 74
>12_02_0012 -
12309332-12310228,12311087-12311669,12311945-12312051,
12313190-12313237,12315139-12315216,12315300-12315500,
12315612-12315797,12315870-12316007,12318311-12318416,
12318529-12318587
Length = 800
Score = 144 bits (350), Expect = 5e-35
Identities = 68/124 (54%), Positives = 92/124 (74%)
Frame = +2
Query: 263 DAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVL 442
D ++++RK RL AE VQG+NVL NF GM TTDKLR +VKKWQTLIEA++DVKTTD Y+L
Sbjct: 76 DEDQAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDNYML 135
Query: 443 RVFCIGFTNKDSLSQRKTCYAQTLRSEQSERKCVKSLHATSLTSELREVVNKLIPDSIAK 622
R+FCIGFT + ++TCYAQ + Q RK V+ + + + +L+E+V+K IP+ I K
Sbjct: 136 RLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMVNQASSCDLKELVSKFIPEVIGK 195
Query: 623 DIEK 634
+IEK
Sbjct: 196 EIEK 199
Score = 96.3 bits (229), Expect = 2e-20
Identities = 44/54 (81%), Positives = 49/54 (90%)
Frame = +3
Query: 93 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQ 254
VDPF +KDWYD+KAPS+F+ R VG TLV+RTQGTKIASEGLK RVFEVSLADLQ
Sbjct: 21 VDPFAKKDWYDIKAPSVFNVRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQ 74
>09_02_0094 + 4196729-4197571
Length = 280
Score = 31.9 bits (69), Expect = 0.59
Identities = 23/85 (27%), Positives = 39/85 (45%)
Frame = -3
Query: 546 FTHFLSDCSDLSVWA*HVLRWLKESLLVKPMQKTRRTYPSVVFTSMLASMRVCHFLTIHL 367
FT FL CS + H L++ KES L +P Y +VF + + F+ +
Sbjct: 139 FTMFLEGCSPFGPFWDHYLQYWKES-LKRPRDVLFLRYEEIVFDPLKVVRDLAGFIGVPF 197
Query: 366 SLSVVRSMPWKLQSTLRPCTYSAIN 292
+ V+S Q +R C++ A++
Sbjct: 198 TEEEVKS--GVDQEVVRLCSFKALS 220
>07_03_0169 +
14670994-14673714,14673799-14673879,14675460-14675612,
14675910-14676073,14676162-14676309,14676426-14676548,
14676754-14676841,14677493-14677674
Length = 1219
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = +2
Query: 509 TLRSEQSERKCVKSLHATSLTSELREVVNKLIPDSIAKDIEKGLPWASNPLARC 670
T+ S E++C ++ TS SE + D +++EK + A N +A+C
Sbjct: 634 TVDSVTPEKECANTVQQTSTFSEQLLGEKRSSTDMSTRNVEKNMHAAENAVAKC 687
>01_07_0288 +
42534552-42534558,42535302-42537280,42537367-42537513,
42537982-42538526,42538906-42538981,42539357-42539437
Length = 944
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +2
Query: 482 SQRKTCYAQTLRSEQSERKCVKSLHATSLTSELREVVNKLIPDSIAKD 625
S +K A TL +E+S + SLT++L+++ +L PD A D
Sbjct: 680 SAKKVQEAMTLVAEESSKSKAAKEVIKSLTAQLKDMAERLPPDQGAYD 727
>06_03_0290 - 19193707-19193752,19193822-19194090
Length = 104
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 327 SATSTAWTSQPISSGGWLKNGRLSSKPTLM 416
+A S A T P S GW+ G S+ P+L+
Sbjct: 67 AAGSAARTRSPSQSNGWITGGSASAMPSLV 96
>03_05_0791 +
27736978-27737217,27737648-27739191,27739512-27739763,
27739844-27739954,27740042-27740102,27740373-27740558
Length = 797
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -1
Query: 236 NFENSSLQSFRSNFRSLGTVDKRGADLPLAE 144
+FENS LQSF +L + K+G P E
Sbjct: 216 SFENSELQSFTDKIENLSSSQKKGYFKPKRE 246
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,791,926
Number of Sequences: 37544
Number of extensions: 544606
Number of successful extensions: 1410
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1406
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -