Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30865
         (785 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37698| Best HMM Match : Ribosomal_S3Ae (HMM E-Value=5e-21)          92   4e-19
SB_17046| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.4  
SB_50272| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_32610| Best HMM Match : Flavi_capsid (HMM E-Value=2.5)              29   4.3  
SB_50701| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.6  
SB_2016| Best HMM Match : HEAT (HMM E-Value=8.6e-07)                   29   5.6  
SB_40531| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_52208| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_50916| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.9  
SB_36931| Best HMM Match : FabA (HMM E-Value=5.5)                      28   9.9  

>SB_37698| Best HMM Match : Ribosomal_S3Ae (HMM E-Value=5e-21)
          Length = 147

 Score = 92.3 bits (219), Expect = 4e-19
 Identities = 45/81 (55%), Positives = 58/81 (71%)
 Frame = +2

Query: 392 TLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQTLRSEQSERKCVKSLHATSLT 571
           TLIEA +DVKTTDGY+LR+FCIGFT +     +KT YA+  + +   +K V  +     T
Sbjct: 2   TLIEAAVDVKTTDGYLLRMFCIGFTKRRQNQIKKTAYAKHTQIKAIRKKMVDIITREVST 61

Query: 572 SELREVVNKLIPDSIAKDIEK 634
           ++L+EVVNKLIPDSI KDIEK
Sbjct: 62  NDLKEVVNKLIPDSIGKDIEK 82


>SB_17046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 343

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 34/124 (27%), Positives = 54/124 (43%), Gaps = 2/124 (1%)
 Frame = -3

Query: 597 LFTTSLSSEVSDVACNDFTH-FLSDCSDL-SVWA*HVLRWLKESLLVKPMQKTRRTYPSV 424
           L  T  +    D  C  FTH  +   S L S++   ++   +   LVKPMQ  RR     
Sbjct: 80  LENTHPTGRSGDWICKFFTHNAIMQISVLTSIFTLTIVSVERYHALVKPMQVGRRLTEDT 139

Query: 423 VFTSMLASMRVCHFLTIHLSLSVVRSMPWKLQSTLRPCTYSAINLNLRKDLSASVSVVDQ 244
           V+ +++AS       T  L L+V   +  K   T + CT    + + +++LS  V +   
Sbjct: 140 VWYAVIASW------TASLILTVPSFVAIKFDETRKACT-GPFDFHTQENLSYMVIIFTV 192

Query: 243 PGKL 232
            G L
Sbjct: 193 SGIL 196


>SB_50272| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 155

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +2

Query: 461 FTNKDSLSQRKTCYAQTLRSE-QSERKCVKSLHATSLTSELREVVNKLIPDSIAKDIE 631
           FT+K  + + + C+ + L S   SE+  V  +  +   S +REV+ K +PD     IE
Sbjct: 38  FTSKALVQRVRPCFQEFLSSALSSEKLFVAVVTQSPQVSLVREVLEKALPDCDTTKIE 95


>SB_32610| Best HMM Match : Flavi_capsid (HMM E-Value=2.5)
          Length = 207

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +2

Query: 464 TNKDSLSQRKTCYAQTLRSEQSERKCVKSLHATSLTSELREVVNKLIPDS 613
           TN    S  +T  ++  R++ +  KC K+L  T L S +RE   +  PDS
Sbjct: 104 TNSQLKSCPRTFSSRCRRNDGAINKCSKTLVLTKLASTVREDTFRAKPDS 153


>SB_50701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 311

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 90  IVDPFTRKDWYDVKAPSMFSKRQ 158
           +V+P+  KDW D    SMFS RQ
Sbjct: 98  LVEPWRWKDWEDFTQSSMFSGRQ 120


>SB_2016| Best HMM Match : HEAT (HMM E-Value=8.6e-07)
          Length = 502

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = +2

Query: 560 TSLTSELREVVNKLIPDSIAKDIEKGLPWASNPLARCLPPKR*KVLKEAP 709
           TS    +R+ V  L+  S+A+ ++K  P     +A CLPP    + +EAP
Sbjct: 392 TSAHDTIRQSVIILM-GSLARHLDKDDPKVQEAVANCLPPLVPAIKEEAP 440


>SB_40531| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 237

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = -1

Query: 179 VDKRGADLPLAEHRRSLDIVPIFASEWVDNLLLNTFFTALRQAFIFPDR 33
           VD +       + +++ D+ PIF  + V  LLL T FT L+   +  DR
Sbjct: 159 VDNQFVPFQTLQTKKAFDVEPIFNGKDVFLLLLWTLFTYLQVISVLNDR 207


>SB_52208| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 640

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 17/59 (28%), Positives = 30/59 (50%)
 Frame = +2

Query: 473 DSLSQRKTCYAQTLRSEQSERKCVKSLHATSLTSELREVVNKLIPDSIAKDIEKGLPWA 649
           DS  +R+  Y Q  + + S+  C  +    S +S+L E   K + DS+ K+ ++   WA
Sbjct: 34  DSTERRE--YLQGAKLQPSQIHCENNAEHDSQSSQLDEEELKKMEDSVPKNTKQQTSWA 90


>SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1864

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -2

Query: 286 FAERPFRVSVSCRSARETSKTLPFNPSEAIFVPWVRLTS 170
           F ERP     + ++ R TS+T+P   + +  +P  R TS
Sbjct: 307 FTERPATTDTTTQTTRATSQTIPTTRATSEAMPKTRATS 345


>SB_50916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1681

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 22/69 (31%), Positives = 31/69 (44%)
 Frame = +2

Query: 512 LRSEQSERKCVKSLHATSLTSELREVVNKLIPDSIAKDIEKGLPWASNPLARCLPPKR*K 691
           LRS +  +  VK L        LRE V K + + +     +G P+   P+A  LP  R  
Sbjct: 715 LRSAKHYKDLVKDLGVQECDGVLREGVKKSVSECVVCKRVQGRPYDKPPIA-ALPEFR-- 771

Query: 692 VLKEAPVSR 718
           V K  P S+
Sbjct: 772 VSKAPPFSK 780


>SB_36931| Best HMM Match : FabA (HMM E-Value=5.5)
          Length = 702

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 29/145 (20%), Positives = 56/145 (38%), Gaps = 2/145 (1%)
 Frame = +2

Query: 314 GRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRK 493
           G  +L  +H  D  +  LR  +      ++  +DV+ +D             K  + +  
Sbjct: 242 GEEMLSLYHPNDAFSQNLRAYISTILPFLKCKMDVQVSD------------KKSMVLRYV 289

Query: 494 TCYAQTLRSEQSERKCVKSLHATSLTSELREV--VNKLIPDSIAKDIEKGLPWASNPLAR 667
           T Y      +Q+    + S + T   +  R V  +  L P+ +         W +NP  R
Sbjct: 290 TSYISKFHDQQTSES-LYSRYVTPAMAGFRHVSDLKPLEPEMVVTLPSFKPAWTNNPTKR 348

Query: 668 CLPPKR*KVLKEAPVSRFSEIGLEI 742
            +PP+   V +   V+++   G +I
Sbjct: 349 YVPPRPSNVDESVLVTKYINRGQDI 373


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,628,679
Number of Sequences: 59808
Number of extensions: 598145
Number of successful extensions: 1563
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1559
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2155861620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)