Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30865
         (785 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          24   1.8  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      24   1.8  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   2.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   5.6  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    22   7.4  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   7.4  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   7.4  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = -1

Query: 101 WVDNLLLNTFFTALRQAFIF 42
           +++++ LNT++  LRQAF F
Sbjct: 223 FIEDIGLNTYYFFLRQAFPF 242


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = -1

Query: 101 WVDNLLLNTFFTALRQAFIF 42
           +++++ LNT++  LRQAF F
Sbjct: 223 FIEDIGLNTYYFFLRQAFPF 242


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = +2

Query: 128 QGSVYVQQEASRHH--ACQPYPGNENCFG 208
           Q S+Y+QQ+  +HH  +   +  N+  FG
Sbjct: 94  QHSLYLQQQQQQHHQDSSSEHASNQERFG 122


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = +1

Query: 577  TQGGGEQVDS*LHCQGHREGPAMGI*PSGAMFASEKV 687
            T GG     + +HCQ  ++ P   I     + +SE +
Sbjct: 1160 TSGGDGVKSAPIHCQTEQDAPEAPIAIKALVMSSESI 1196


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 8/31 (25%), Positives = 17/31 (54%)
 Frame = -3

Query: 618 AMESGINLFTTSLSSEVSDVACNDFTHFLSD 526
           A +  +N F  +++ ++    CND   ++SD
Sbjct: 181 AEDINMNTFIANIAVDLGKGGCNDAFAYMSD 211


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 771 LAVHRLSPGEISNPISENLET 709
           L  +   PG +SNP+   LET
Sbjct: 179 LITNTSGPGVVSNPMIAELET 199


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 771 LAVHRLSPGEISNPISENLET 709
           L  +   PG +SNP+   LET
Sbjct: 179 LITNTSGPGVVSNPMIAELET 199


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,807
Number of Sequences: 438
Number of extensions: 5549
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)