Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30865
         (785 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g34670.1 68417.m04922 40S ribosomal protein S3A (RPS3aB)           143   1e-34
At3g04840.1 68416.m00525 40S ribosomal protein S3A (RPS3aA) simi...   142   2e-34
At3g15410.1 68416.m01955 leucine-rich repeat family protein cont...    31   0.87 
At5g39970.1 68418.m04847 expressed protein low similarity to up-...    30   1.5  
At4g29750.1 68417.m04237 expressed protein contains Pfam domain,...    29   2.6  
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ...    29   4.6  
At2g17930.1 68415.m02076 FAT domain-containing protein / phospha...    28   8.1  

>At4g34670.1 68417.m04922 40S ribosomal protein S3A (RPS3aB)
          Length = 262

 Score =  143 bits (346), Expect = 1e-34
 Identities = 67/124 (54%), Positives = 91/124 (73%)
 Frame = +2

Query: 263 DAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVL 442
           D + ++RK RL AE VQGRNVL  F GMD TTDKLR +VKKWQTLIEA++DVKTTDGY L
Sbjct: 76  DEDNAYRKIRLRAEDVQGRNVLTQFWGMDFTTDKLRSLVKKWQTLIEAHVDVKTTDGYTL 135

Query: 443 RVFCIGFTNKDSLSQRKTCYAQTLRSEQSERKCVKSLHATSLTSELREVVNKLIPDSIAK 622
           R+FCI FT + +   ++TCYAQ+ +  Q  RK  + +   + + +L+E+V K IP++I +
Sbjct: 136 RMFCIAFTKRRANQVKRTCYAQSSQIRQIRRKMSEIMVKEASSCDLKELVAKFIPEAIGR 195

Query: 623 DIEK 634
           +IEK
Sbjct: 196 EIEK 199



 Score = 95.5 bits (227), Expect = 4e-20
 Identities = 44/54 (81%), Positives = 48/54 (88%)
 Frame = +3

Query: 93  VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQ 254
           VDPF++KDWYDVKAP  F+ R VG TLV+RTQGTKIASEGLK RVFEVSLADLQ
Sbjct: 21  VDPFSKKDWYDVKAPGSFTNRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQ 74


>At3g04840.1 68416.m00525 40S ribosomal protein S3A (RPS3aA) similar
           to 40S ribosomal protein S3A (S phase specific protein
           GBIS289) GB:P49396 [Brassica rapa]
          Length = 262

 Score =  142 bits (344), Expect = 2e-34
 Identities = 66/124 (53%), Positives = 90/124 (72%)
 Frame = +2

Query: 263 DAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVL 442
           D + ++RK RL AE VQGRNVLC F GMD TTDKLR +VKKWQTLIEA++DVKTTD Y L
Sbjct: 76  DEDNAYRKIRLRAEDVQGRNVLCQFWGMDFTTDKLRSLVKKWQTLIEAHVDVKTTDSYTL 135

Query: 443 RVFCIGFTNKDSLSQRKTCYAQTLRSEQSERKCVKSLHATSLTSELREVVNKLIPDSIAK 622
           R+FCI FT + +   ++TCYAQ+ +  Q  RK    +   + + +L+++V K IP++I +
Sbjct: 136 RLFCIAFTKRRANQVKRTCYAQSSQIRQIRRKMRDIMVREASSCDLKDLVAKFIPEAIGR 195

Query: 623 DIEK 634
           +IEK
Sbjct: 196 EIEK 199



 Score = 97.5 bits (232), Expect = 9e-21
 Identities = 45/54 (83%), Positives = 50/54 (92%)
 Frame = +3

Query: 93  VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQ 254
           VDPF++KDWYDVKAPS+F+ R VG TLV+RTQGTKIASEGLK RVFEVSLADLQ
Sbjct: 21  VDPFSKKDWYDVKAPSIFTHRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQ 74


>At3g15410.1 68416.m01955 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to Hcr2-5D
           [Lycopersicon esculentum] gi|3894393|gb|AAC78596;
           identical to leucine-rich repeat protein [Arabidopsis
           thaliana] gi|2760084|emb|CAA76000
          Length = 584

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 17/35 (48%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
 Frame = +1

Query: 472 GLLEPTQDVLRPD-TQVRAIRKKMCEIITRDVTNF 573
           GLLEPT +VLR D   +R+IR+ + E  T+ V N+
Sbjct: 542 GLLEPTLEVLRLDGNPLRSIRRPILERGTKAVLNY 576


>At5g39970.1 68418.m04847 expressed protein low similarity to
           up-regulated by thyroid hormone in tadpoles; expressed
           specifically in the tail and only at metamorphosis;
           membrane bound or extracellular protein; C-terminal
           basic region [Xenopus laevis] GI:1234787
          Length = 690

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 7/71 (9%)
 Frame = -1

Query: 773 PLPFTGFRPVKFPIQFRRISKRGPP-SRLFTFSEAN------IAPEG*MPMAGPSRCPWQ 615
           PL      P+    +    S   PP   +F+F E +      +A  G   + GPSRC + 
Sbjct: 583 PLQCASDSPIPCSSETEPSSSSSPPIGFVFSFGEDDNKDIYLLASTGVYRIVGPSRCNFH 642

Query: 614 WSQESTCSPPP 582
            S E+T S PP
Sbjct: 643 CSLENTTSSPP 653


>At4g29750.1 68417.m04237 expressed protein contains Pfam domain,
           PF04581: Protein of unknown function (DUF578)
          Length = 776

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/61 (24%), Positives = 35/61 (57%)
 Frame = +2

Query: 473 DSLSQRKTCYAQTLRSEQSERKCVKSLHATSLTSELREVVNKLIPDSIAKDIEKGLPWAS 652
           ++L++R+    + L++++ + + + S  AT LTS+ +    +L+  ++A+ I     WA 
Sbjct: 484 EALTERQKEITEVLQAKEDQAREMASTRAT-LTSQAKSPKTQLLAGTLAETIAASSRWAP 542

Query: 653 N 655
           N
Sbjct: 543 N 543


>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
           similar to oligouridylate binding protein GI:6996560
           from [Nicotiana plumbaginifolia]
          Length = 426

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 20/60 (33%), Positives = 26/60 (43%)
 Frame = -3

Query: 687 HLFGGKHRARGLDAHGRPFSMSLAMESGINLFTTSLSSEVSDVACNDFTHFLSDCSDLSV 508
           H+FG   +     A G+    S    S  N+F   LS EV+D A  D     + CSD  V
Sbjct: 124 HIFGQPMKVNWAYATGQREDTS----SHFNIFVGDLSPEVTDAALFDSFSAFNSCSDARV 179


>At2g17930.1 68415.m02076 FAT domain-containing protein /
            phosphatidylinositol 3- and 4-kinase family protein
            contains Pfam profiles PF02259 FAT domain, PF00454
            Phosphatidylinositol 3- and 4-kinase, PF02260: FATC
            domain
          Length = 3795

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = -1

Query: 224  SSLQSFRSNFRSLGTVDKRGADLPLAEHRRSLDIVPIFASEWVDNLLLN 78
            S LQS RS F +L  + K  A +   ++ + L++V +  S+W+    LN
Sbjct: 1576 SWLQSNRSVFDTLVLIWKSPARISRLQNEQELNLVQVKESKWLVKCFLN 1624


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,593,516
Number of Sequences: 28952
Number of extensions: 419161
Number of successful extensions: 1166
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1093
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1164
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1765546400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)