Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30864
(826 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb... 32 0.11
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 30 0.35
SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi... 29 0.80
SPBC609.02 |ptn1||phosphatidylinositol-3,4,5-trisphosphate3-phos... 29 0.80
SPBC365.09c |||human KIN homolog|Schizosaccharomyces pombe|chr 2... 28 1.8
SPBC14C8.16c |bot1||mitochondrial ribosomal protein subunit S35 ... 27 4.3
SPBC16D10.07c |sir2||Sir2 family histone deacetylase Sir2|Schizo... 25 9.9
SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr 1|... 25 9.9
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 25 9.9
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 25 9.9
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|... 25 9.9
SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomy... 25 9.9
>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 542
Score = 31.9 bits (69), Expect = 0.11
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Frame = -1
Query: 538 RFKALRCFNFNSFSTVIISSLFSDSRAIHSLSMVAKSNSSIFSAISI---KLSTRLRHSE 368
++K + N N+FS S+F R SL + K +++FS I++ KLS +HS+
Sbjct: 300 KYKKMHLQNPNNFSLDFTLSIFERLRKDSSLQLTTKDINTLFSTIALSPTKLSMASKHSK 359
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 30.3 bits (65), Expect = 0.35
Identities = 17/68 (25%), Positives = 30/68 (44%)
Frame = +3
Query: 246 QTVFRDFMEEAKMRHGLRTLHFWERVDKYISSQDTVHSASHSECLKRVDSLIDIAEKIEE 425
Q VF +F +A + L W+ + +Q+ ++ H EC+ +DS I
Sbjct: 115 QLVFEEFQFDAYLPCTPAELIPWDH-GSFTMNQEDAYTGQHGECVLVIDSGYSFTHIIPV 173
Query: 426 FDFATMER 449
DF+ E+
Sbjct: 174 IDFSVQEQ 181
>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
Gut2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 649
Score = 29.1 bits (62), Expect = 0.80
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -2
Query: 480 LCSQIPVRYTVFPWWQSRIPQFF 412
LC+ +P+ V+ WWQ +P FF
Sbjct: 152 LCTVLPIMIPVYKWWQ--VPYFF 172
>SPBC609.02 |ptn1||phosphatidylinositol-3,4,
5-trisphosphate3-phosphatase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 348
Score = 29.1 bits (62), Expect = 0.80
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = -1
Query: 535 FKALRCFNFNSFSTVIIS-SLFSDSRAIHSLSMVAKSNSSIFSAISIKLSTRLRHSEC 365
FK+ +C N S++I+S FS R I+ +++ S+ S + +SIK R+ +C
Sbjct: 204 FKSFKCLNIKKNSSLILSLHAFSKGRNINPVALWKSSDISSHN-VSIKEGKRIWGIQC 260
>SPBC365.09c |||human KIN homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 304
Score = 27.9 bits (59), Expect = 1.8
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +3
Query: 258 RDFMEEAKMRHGLRTLHFWERVDKYISSQDTVH 356
RDF+ + HG + +HF + +YI ++ VH
Sbjct: 74 RDFISLLRTAHGEKKIHFNQFYQEYIRDKNHVH 106
>SPBC14C8.16c |bot1||mitochondrial ribosomal protein subunit S35
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 315
Score = 26.6 bits (56), Expect = 4.3
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +3
Query: 267 MEEAKMRHGLRTLHFWERVDKYISSQDTVHSASHSECLKRVDSLIDIA 410
+EE MR H K ++ + + S+S SE KRV LID++
Sbjct: 246 IEELNMRQNATHFHKTSDEHKDLNEDEELISSSPSEVGKRVFRLIDLS 293
>SPBC16D10.07c |sir2||Sir2 family histone deacetylase
Sir2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 475
Score = 25.4 bits (53), Expect = 9.9
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 112 GWTNEIMDTCFVACCCNCAKNYGFTKTDLD 201
GW NE+ C + C + +K F +TDLD
Sbjct: 428 GWLNELQALCDLPECHSGSKTRAF-ETDLD 456
>SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 464
Score = 25.4 bits (53), Expect = 9.9
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -3
Query: 323 DTLPKV*SSKSMPHFSFFHKIPKHCLPLLLFNKFS 219
D LPK+ S P+ F + K C+P+L+ K +
Sbjct: 11 DDLPKIEFIDSCPYQVFLEQYLKPCVPVLIGPKLT 45
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 25.4 bits (53), Expect = 9.9
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = -2
Query: 612 HPSLIEKHFCFNSSQQNVF 556
HPS I HF +N ++N++
Sbjct: 1763 HPSSIALHFVYNVDKENIY 1781
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 25.4 bits (53), Expect = 9.9
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +1
Query: 289 MDLELYTFGSVSTNISLLKTQCTVLHTRN 375
MD+E F S+S N+SL T TVL+ +N
Sbjct: 486 MDIETIPFDSLSRNLSL--TVQTVLYLKN 512
>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
3|||Manual
Length = 828
Score = 25.4 bits (53), Expect = 9.9
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -1
Query: 289 CLILASSIKSLNTVCHCYY 233
CL +A S K L TVC C Y
Sbjct: 154 CLRIAESGKCLCTVCSCLY 172
>SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 505
Score = 25.4 bits (53), Expect = 9.9
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 358 VLHTRNVSNVWIV*SI*RKKLRNSTLPPWKDCV 456
VL TR V + W++ + + +LPPWK+ V
Sbjct: 115 VLATRLVVDFWLIPTEGDPVSASLSLPPWKEAV 147
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,312,701
Number of Sequences: 5004
Number of extensions: 66633
Number of successful extensions: 169
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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