Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30864
         (826 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0322 - 2898272-2898475,2898548-2898730,2898817-2899702,290...    33   0.28 
10_08_0782 + 20517103-20519601                                         29   5.9  

>08_01_0322 -
           2898272-2898475,2898548-2898730,2898817-2899702,
           2902070-2902374
          Length = 525

 Score = 33.1 bits (72), Expect = 0.28
 Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 8/101 (7%)
 Frame = -1

Query: 541 SRFKALRCFNFNSFSTVIISSLFSDSRAIHSLSMV-AKSNSSIFSAISIKLSTRLRHSEC 365
           S  K L C N+ S S + I +LFS   A+  L MV     ++ FS+ S+K  T   HS  
Sbjct: 260 SHLKIL-CLNYVSISDLFIENLFSGCPALQDLVMVDCCVYATRFSSSSLKNLTFTSHSPD 318

Query: 364 EA-LCTVS*EEIYLSTRS------QKCKVLSPCLILASSIK 263
              L     +++ + T S      +    L+PCL+ ASS++
Sbjct: 319 NGDLVHDDFKDLVIDTPSLVSLHLEYLPFLAPCLLNASSVE 359


>10_08_0782 + 20517103-20519601
          Length = 832

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = +3

Query: 312 WERVDKYISS-QDTVHSASHSECLKRVDSLIDIAEKIE 422
           +E VDK + + ++ VH  +H + LK +DS+ +  E IE
Sbjct: 360 YEVVDKGVETVKEVVHYHAHRDVLKELDSIAEQIEAIE 397


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,914,031
Number of Sequences: 37544
Number of extensions: 372939
Number of successful extensions: 753
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)