Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30864
         (826 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47689| Best HMM Match : INCENP_ARK-bind (HMM E-Value=0.57)          30   2.6  
SB_42160| Best HMM Match : RVT_1 (HMM E-Value=0)                       30   2.6  
SB_17340| Best HMM Match : 7tm_3 (HMM E-Value=0)                       29   4.6  
SB_25694| Best HMM Match : RVT_1 (HMM E-Value=1.9e-22)                 29   6.1  
SB_26899| Best HMM Match : INCENP_ARK-bind (HMM E-Value=0.73)          29   6.1  
SB_42038| Best HMM Match : Phage_integrase (HMM E-Value=0.87)          28   8.0  
SB_53803| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  

>SB_47689| Best HMM Match : INCENP_ARK-bind (HMM E-Value=0.57)
          Length = 295

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 19/68 (27%), Positives = 32/68 (47%)
 Frame = +3

Query: 243 WQTVFRDFMEEAKMRHGLRTLHFWERVDKYISSQDTVHSASHSECLKRVDSLIDIAEKIE 422
           W+T  R F    K+  G+R +   E V     ++  ++SA+  +C  R+D  ++  EK  
Sbjct: 174 WKTWLRKFQ---KLERGVRHMQDTENVLDLGQTKQVINSAAAKKCGARLDLALEEYEKGP 230

Query: 423 EFDFATME 446
           E    T E
Sbjct: 231 ESPVTTQE 238


>SB_42160| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 1858

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 19/68 (27%), Positives = 32/68 (47%)
 Frame = +3

Query: 243 WQTVFRDFMEEAKMRHGLRTLHFWERVDKYISSQDTVHSASHSECLKRVDSLIDIAEKIE 422
           W+T  R F    K+  G+R +   E V     ++  ++SA+  +C  R+D  ++  EK  
Sbjct: 614 WKTWLRKFQ---KLERGVRHMQDTENVLDLGQTKQVINSAAAKKCGARLDLALEEYEKGP 670

Query: 423 EFDFATME 446
           E    T E
Sbjct: 671 ESPVTTQE 678


>SB_17340| Best HMM Match : 7tm_3 (HMM E-Value=0)
          Length = 890

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = +3

Query: 255 FRDFMEEAKMRHGLRTLH-FWERVDKYISSQDTVHSASHSECLKRVDSLIDIAEKIEEF 428
           +RDF+E AK++    T H +W     +++++    +A+  EC   + + I I   ++EF
Sbjct: 460 YRDFLE-AKLKQDRSTAHPWWHEFWDHMTNEYCSTAANMRECSNNISADILIESMMDEF 517


>SB_25694| Best HMM Match : RVT_1 (HMM E-Value=1.9e-22)
          Length = 1797

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
 Frame = +3

Query: 243  WQTVFRDFMEEAKMRHGLRTLHFWERVDKYISSQDTVHSASHSECLKRVDSLIDIAEK-I 419
            W+T  R F    K   G+R +   E V      +  ++SA+  +C  R+D  ++  EK +
Sbjct: 1547 WKTCLRKFQ---KWERGVRHMQDTENVLDLGQVKQVINSAAAKKCGARLDLALEEYEKGL 1603

Query: 420  EEFDFATMERL 452
             E    T E+L
Sbjct: 1604 PESPVTTQEKL 1614


>SB_26899| Best HMM Match : INCENP_ARK-bind (HMM E-Value=0.73)
          Length = 311

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 19/68 (27%), Positives = 31/68 (45%)
 Frame = +3

Query: 243 WQTVFRDFMEEAKMRHGLRTLHFWERVDKYISSQDTVHSASHSECLKRVDSLIDIAEKIE 422
           W+T  R F    K+  G+R +   E V      +  ++SA+  +C  R+D  ++  EK  
Sbjct: 235 WKTWLRKFQ---KLERGVRHMQDTENVLDLGQVKQVINSAAAKKCGARLDLALEEYEKGP 291

Query: 423 EFDFATME 446
           E    T E
Sbjct: 292 ESPVTTQE 299


>SB_42038| Best HMM Match : Phage_integrase (HMM E-Value=0.87)
          Length = 417

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 19/68 (27%), Positives = 30/68 (44%)
 Frame = +3

Query: 243 WQTVFRDFMEEAKMRHGLRTLHFWERVDKYISSQDTVHSASHSECLKRVDSLIDIAEKIE 422
           W+T  R F    K   G+R +   E V      +  ++SA+  +C  R+D  ++  EK  
Sbjct: 98  WKTCLRKFQ---KWERGVRHIQDTENVLDLGQVKQVINSAAAKKCGARLDLALEEYEKGP 154

Query: 423 EFDFATME 446
           E    T E
Sbjct: 155 ESPVTTQE 162


>SB_53803| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 619

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -2

Query: 474 SQIPVRYTVFPWWQSRIPQFF 412
           SQ P+RY+ +P W S+ P ++
Sbjct: 338 SQSPMRYSQYPMWYSQYPMWY 358


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,063,554
Number of Sequences: 59808
Number of extensions: 477321
Number of successful extensions: 1216
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1215
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2311562737
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)