Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30864
         (826 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U52517-1|AAA97927.1|  846|Caenorhabditis elegans hum-3 protein.        30   1.7  
AF098989-1|AAK18955.1| 1219|Caenorhabditis elegans Defective spe...    30   1.7  
AC006712-2|AAK39324.1|  754|Caenorhabditis elegans Hypothetical ...    29   3.1  
Z81557-10|CAE17851.1|   98|Caenorhabditis elegans Hypothetical p...    29   4.0  
U97008-10|AAB52315.2|  494|Caenorhabditis elegans Cytochrome p45...    29   4.0  

>U52517-1|AAA97927.1|  846|Caenorhabditis elegans hum-3 protein.
          Length = 846

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +3

Query: 366 HSECLKRVDSLI-DIAEKIEEFDFATMERLCIARESENREE 485
           + +C+KRVDS+I D+  ++E  + A +ER     E + R E
Sbjct: 702 YEDCVKRVDSIIADLKLQLENDELAEVERARKEAEDKERRE 742


>AF098989-1|AAK18955.1| 1219|Caenorhabditis elegans Defective
            spermatogenesis protein15 protein.
          Length = 1219

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +3

Query: 366  HSECLKRVDSLI-DIAEKIEEFDFATMERLCIARESENREE 485
            + +C+KRVDS+I D+  ++E  + A +ER     E + R E
Sbjct: 905  YEDCVKRVDSIIADLKLQLENDELAEVERARKEAEDKERRE 945


>AC006712-2|AAK39324.1|  754|Caenorhabditis elegans Hypothetical
           protein Y119C1B.5 protein.
          Length = 754

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 19/97 (19%), Positives = 47/97 (48%), Gaps = 3/97 (3%)
 Frame = -1

Query: 517 FNFNSFSTVIISSLFSDSRAI-HSLSMVAKSNSSIFSAISIKLSTRLRHSECEALCTVS* 341
           F+F +F+ ++   + +  + + H++S +   N+++ +   +  +  ++  E E +C +  
Sbjct: 549 FSFATFAILLFHVIVNIYKRLEHTVSFIKNRNAAVKNINRLSKADVVQLREREDVCAICF 608

Query: 340 EEIYLSTRSQKCK--VLSPCLILASSIKSLNTVCHCY 236
            E+    R   CK     PCL    ++K +  +C+ Y
Sbjct: 609 IEMKEEARITPCKHYFHGPCLRKWLAVKMVCPLCYTY 645


>Z81557-10|CAE17851.1|   98|Caenorhabditis elegans Hypothetical
           protein F59A1.16 protein.
          Length = 98

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 13/47 (27%), Positives = 28/47 (59%)
 Frame = +3

Query: 315 ERVDKYISSQDTVHSASHSECLKRVDSLIDIAEKIEEFDFATMERLC 455
           +++D Y+       + S S C K + SL++IA+++++   +T + LC
Sbjct: 47  KQIDDYVKKH-VEKNCSGSTCPKLIKSLVEIADQLDDDLDSTPQELC 92


>U97008-10|AAB52315.2|  494|Caenorhabditis elegans Cytochrome p450
           family protein 35A2 protein.
          Length = 494

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
 Frame = +3

Query: 309 FWERVDKYISSQDTVHSASHSECLKRVDSLIDIAEKIEE---FDFATMERLCIARESENR 479
           F  R DK  S+Q+T  + + +E +KRV+S+      I+E    D+     L I +E E++
Sbjct: 229 FKHRYDKIWSAQETAKNFAAAEAIKRVESIKSGKYVIDENNLQDYTDAFLLKIQKEGESK 288

Query: 480 E 482
           +
Sbjct: 289 D 289


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,111,491
Number of Sequences: 27780
Number of extensions: 367323
Number of successful extensions: 830
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2040452812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)