Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30864
         (826 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g77260.1 68414.m08998 dehydration-responsive protein-related ...    30   1.6  
At1g09730.1 68414.m01092 Ulp1 protease family protein low simila...    30   1.6  
At2g40030.1 68415.m04919 DNA-directed RNA polymerase alpha subun...    29   2.8  
At1g03300.1 68414.m00308 agenet domain-containing protein contai...    29   2.8  
At2g26310.1 68415.m03157 expressed protein                             29   5.0  
At3g22550.1 68416.m02849 senescence-associated protein-related s...    28   6.5  
At3g02130.1 68416.m00180 leucine-rich repeat transmembrane prote...    28   6.5  
At2g20540.1 68415.m02399 pentatricopeptide (PPR) repeat-containi...    28   6.5  
At4g17600.1 68417.m02632 lil3 protein identical to Lil3 protein ...    28   8.7  

>At1g77260.1 68414.m08998 dehydration-responsive protein-related
           similar to early-responsive to dehydration stress ERD3
           protein [Arabidopsis thaliana] GI:15320410; contains
           Pfam profile PF03141: Putative methyltransferase
          Length = 655

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = -1

Query: 538 RFKALRCFNFNSFSTVIISSLFSDSRAIHSLSMVAKSNSSIFSAISIKLST 386
           R   L  F F S ST+ + + FSDS +  SL     S+S++  AI   +++
Sbjct: 15  RLVKLIAFAFLSISTIFLFNHFSDSFSYPSLPFPISSSSNVTEAIQTNITS 65


>At1g09730.1 68414.m01092 Ulp1 protease family protein low
           similarity to SP|Q9GZR1 SUMO-1-specific protease 1 (EC
           3.4.22.-) (Sentrin-specific protease SENP6) (Protease
           FKSG6) {Homo sapiens}; contains Pfam profile PF02902:
           Ulp1 protease family, C-terminal catalytic domain
          Length = 984

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = +2

Query: 425 IRLCHHGKTVYRTGI*-EQRRNYYCAKTVKVEAAKGFEAGIQCF*KTFCCEELKQK 589
           I +CH G+   RT +  +  +   C   + +++ KG  AG++   +T+ CEE K++
Sbjct: 546 IVICHPGEVANRTDLDLDDSKKVPCI--LHMDSIKGSHAGLKNLVQTYLCEEWKER 599


>At2g40030.1 68415.m04919 DNA-directed RNA polymerase alpha subunit
           family protein contains InterPro accession IPR000722:
           RNA polymerase, alpha subunit
          Length = 888

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +2

Query: 473 EQRRNYYCAKTVKVEAAKGFEAGIQCF*KTFCCEELKQKCFSIRD 607
           +Q  +  C K +K++ AKG   G+       CCEE  Q   SI+D
Sbjct: 42  KQMLSLLCLKCLKIKKAKGTSGGLADRLLGVCCEEASQ--ISIKD 84


>At1g03300.1 68414.m00308 agenet domain-containing protein contains
           Pfam PF05641: Agenet domain
          Length = 670

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = +3

Query: 285 RHGLRTLHFWERVDKYISSQDT-VHSASHSECLKRVDSLIDIAEKIEEFDFATMERLCIA 461
           +HG        R+ K +  QD     A   +CL++     +I  K  E +FA  ER+ I 
Sbjct: 563 KHGFNVTDPLSRISKVLPLQDKRAKKAEERKCLEKKIECEEIERKRFEEEFADFERIIIE 622

Query: 462 RESE 473
           ++ +
Sbjct: 623 KKRQ 626


>At2g26310.1 68415.m03157 expressed protein
          Length = 398

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +1

Query: 574 RIKTKVLFN*GWMCHHTRECTKIALKLSTLPVQK-*SCDPYYKFL 705
           RIK+  ++  G+  H +  C K+  K +++P  K   CD  YK L
Sbjct: 228 RIKSLKVYAFGFYVHPSSVCQKLGRKYASVPASKLDKCDDLYKDL 272


>At3g22550.1 68416.m02849 senescence-associated protein-related
           similar to senescence-associated protein SAG102
           (GI:22331931) [Arabidopsis thaliana]
          Length = 267

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +1

Query: 142 FVACCCNCAKNYG 180
           F++CCCNC K+ G
Sbjct: 222 FLSCCCNCKKSLG 234


>At3g02130.1 68416.m00180 leucine-rich repeat transmembrane protein
           kinase, putative contains Pfam profile: Eukaryotic
           protein kinase domain
          Length = 985

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = -3

Query: 275 FFHKIPKHCLPLLLFNKFSMLSVKRSRSVFVKP*FLAQLQQQATKHVSIISFVQPCV 105
           F +    HC P++ F++FS+ S     SV++   F  +  Q  T  + + S   P V
Sbjct: 312 FLNNTTSHCPPVVYFDRFSIESYSDPSSVYLS--FFTEKAQVGTSLIDLGSDGGPAV 366


>At2g20540.1 68415.m02399 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 534

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +3

Query: 327 KYISSQDTVHSASHSECLKRVDSLIDIAEKIEEFDFAT 440
           K I++   +H  S S  +  V  ++D  +KIE+ D+AT
Sbjct: 27  KKINASIIIHGLSQSSFM--VTKMVDFCDKIEDMDYAT 62


>At4g17600.1 68417.m02632 lil3 protein identical to Lil3 protein
           [Arabidopsis thaliana] gi|4741966|gb|AAD28780
          Length = 262

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 17/37 (45%), Positives = 23/37 (62%)
 Frame = -3

Query: 302 SSKSMPHFSFFHKIPKHCLPLLLFNKFSMLSVKRSRS 192
           SS S+ + +F   IPK    LL  N+FS+LSV R+ S
Sbjct: 9   SSSSLQNPNF---IPKFSFSLLSSNRFSLLSVTRASS 42


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,778,835
Number of Sequences: 28952
Number of extensions: 326236
Number of successful extensions: 761
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1892353600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)