Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30862
         (895 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    34   0.024
SPAC3A12.08 |||conserved fungal protein|Schizosaccharomyces pomb...    28   2.1  
SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr 1|...    27   2.7  
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    26   6.3  
SPCC965.07c |gst2||glutathione S-transferase Gst2|Schizosaccharo...    26   6.3  
SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei...    26   8.3  
SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        26   8.3  
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce...    26   8.3  

>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
           Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 34.3 bits (75), Expect = 0.024
 Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
 Frame = +3

Query: 6   IDATLQVTVPEKNVLQKAI-VPLELKSGKASVSAEHRGQLVMYGMMLS 146
           IDAT++V + EK      + +PLELK+G+   +  H  Q ++Y +++S
Sbjct: 574 IDATVEVVLTEKPESSSTLTLPLELKTGRYVDNISHFAQSLLYTLLIS 621


>SPAC3A12.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 214

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +2

Query: 266 LRNQLVENLTSDPKDPDPEQLTDIEDASFLLQQKLPEP 379
           LR+    + ++ P+DP P +  D+   S+ +  K P P
Sbjct: 145 LRSSQANSQSTQPRDPIPTENFDVRTPSYSINYKKPVP 182


>SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1018

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -1

Query: 148 KLSIIPYITSW-PRCSADTDAFPLFNSKGTMAFWRTFFSGT 29
           K+S +  I+S   +C  D D     +SKG  + W   ++GT
Sbjct: 743 KISALRLISSLINKCEKDEDISSFISSKGVTSLWDKVYTGT 783


>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1234

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
 Frame = +3

Query: 93  SVSAEHR--GQLVMYGMMLSLHRNEDPTVALQRGLL 194
           S+S +HR    L++ G+M  L++ +DP  +L+  +L
Sbjct: 149 SLSLQHRQLSSLILRGIMEDLYQYDDPVASLRSHIL 184


>SPCC965.07c |gst2||glutathione S-transferase
           Gst2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 230

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +3

Query: 150 HRNEDPTVALQRGLLLYLRDKVDV-REVNCGYPE 248
           H+N D T+     +L+YL DK D  R+++  + +
Sbjct: 61  HKNNDYTIWESDAILIYLADKYDTDRKISLSFDD 94


>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
           Vps41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 886

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
 Frame = +3

Query: 39  KNVLQKAIVPLELKSGKASVS---AEHRGQLVMYGMMLSLHRNEDPTVALQ 182
           +N+L K     +L   K S+S   A+H+ Q+ +Y     L +NE  ++A++
Sbjct: 728 RNLLSKIPPGTKLPHMKKSISKLLADHQSQVQLYQSCYKLFKNESISMAIK 778


>SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +3

Query: 315 IQNS*LILKMPHFYFSKSYQNRSIMREHALNVRIYPFVLCIC 440
           + N+  I  +P FY    Y  ++I+ ++ L +  Y + L IC
Sbjct: 35  VSNAPNIYSIPFFYDRICYDYKNILLKYELFIIYYYYYLLIC 76


>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 681

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -1

Query: 727 NHLNVEIREDVFHPIAPTVFNFQIGNYKS 641
           +H +  +   VF PI+PT  +  + NY S
Sbjct: 375 DHADASLTTHVFDPISPTALSNSVLNYDS 403


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,864,217
Number of Sequences: 5004
Number of extensions: 83214
Number of successful extensions: 204
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)