Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30862
(895 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0959 + 29692740-29693035,29693102-29693267,29693433-296936... 33 0.23
02_04_0346 - 22183145-22183264,22183877-22183966,22184140-221842... 31 1.6
01_01_0588 + 4372877-4372949,4374328-4376262,4376940-4377015,437... 29 3.8
11_06_0142 - 20564572-20565951 29 5.0
11_06_0234 + 21574380-21575197,21576131-21576190,21578320-215800... 28 8.7
06_02_0200 - 12946139-12946282,12947636-12947842,12949506-129496... 28 8.7
05_06_0174 - 26149663-26149885,26150353-26151701 28 8.7
03_02_0406 + 8182870-8184262,8184376-8184452,8184809-8184920,818... 28 8.7
02_05_0938 + 32901143-32901215,32901841-32901982,32902243-329023... 28 8.7
02_05_0263 - 27257150-27259213 28 8.7
01_03_0271 + 14454681-14456949,14457222-14457476,14458800-144588... 28 8.7
>04_04_0959 +
29692740-29693035,29693102-29693267,29693433-29693612,
29693703-29693771,29693888-29694088,29694187-29694240,
29694325-29694386,29694488-29694620,29694789-29694899,
29695008-29695104,29695638-29695714,29696129-29696194,
29696431-29696583,29697392-29697447,29697524-29697584,
29697656-29697766,29698010-29698144,29698217-29698447,
29699001-29699075,29699161-29699282,29699381-29699453,
29699538-29699642,29699728-29699895,29700079-29700148,
29700224-29700375,29700574-29700651,29700744-29700836,
29700961-29701098,29701237-29701276,29701350-29701423,
29701777-29701911,29702345-29702464,29702778-29702939
Length = 1287
Score = 33.5 bits (73), Expect = 0.23
Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Frame = +3
Query: 6 IDATLQVTVPEKNVLQKAIVPLELKSGKAS---VSAEHRGQLVMYGMMLS-LHRNEDPTV 173
IDA+++ V ++PLE K+GK + + EH Q+++Y ++++ + N+D
Sbjct: 523 IDASIRSRVSCNGSSYDRVMPLEFKTGKGTSGQTAVEHTAQVILYTLLMTERYLNKD--- 579
Query: 174 ALQRGLLLYL 203
+ GLL YL
Sbjct: 580 -IDLGLLYYL 588
>02_04_0346 -
22183145-22183264,22183877-22183966,22184140-22184220,
22184430-22184589,22184723-22184787,22185370-22185441,
22186163-22186327
Length = 250
Score = 30.7 bits (66), Expect = 1.6
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Frame = +2
Query: 170 CGFTTWTVALFERQSRREGG*LWIPREAHLVMLRNQLVENLT---SDPKDPDPEQ 325
C W +++ +RQ +R+ + +P E +++ RN P P PEQ
Sbjct: 194 CYIMAWAISIMQRQRQRQEEAMLLPTEVAIILHRNGRTMQFAVAPESPTTPHPEQ 248
>01_01_0588 +
4372877-4372949,4374328-4376262,4376940-4377015,
4378900-4378970,4379038-4379144,4379241-4379711,
4379791-4379976,4380132-4380425,4380820-4381434,
4382219-4382615,4382768-4382850,4383397-4383567,
4384046-4384243,4384754-4385314,4385401-4385460,
4385553-4385869,4385980-4386403,4386539-4387006,
4387093-4387209,4387306-4387427,4387506-4388247,
4388453-4388485,4388625-4388879,4388975-4389160,
4390115-4390453,4391293-4392045
Length = 3017
Score = 29.5 bits (63), Expect = 3.8
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = -1
Query: 868 PKRYRALSSAN*LELDKFPAGYPTVLPSNTGLLRTPLLEALSPL 737
P++ R S+N ++D +P+G+ T P GL + +PL
Sbjct: 459 PRKRRKHCSSNENQVDSWPSGFSTTTPMKDGLAYPDTMAVSNPL 502
>11_06_0142 - 20564572-20565951
Length = 459
Score = 29.1 bits (62), Expect = 5.0
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +2
Query: 344 ASFLLQQKLPEPINHERACTKCPYLSICSVHLWHSGG 454
A+ L+ P P NH T C YL+I H H G
Sbjct: 282 ATMLMFATPPRPCNHHLKKTMCRYLAITPQHPQHVAG 318
>11_06_0234 +
21574380-21575197,21576131-21576190,21578320-21580053,
21581859-21582006
Length = 919
Score = 28.3 bits (60), Expect = 8.7
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = -3
Query: 305 WDPK*DFQ--LTDSSALPSAPLWVSTVNLPHV 216
W+P F+ D S LP P WV +V +PH+
Sbjct: 755 WEPPRQFRKFYVDGS-LPRRPTWVDSVRIPHL 785
>06_02_0200 -
12946139-12946282,12947636-12947842,12949506-12949629,
12950167-12950369,12950922-12951620,12951723-12951784,
12952395-12952404,12954905-12957631
Length = 1391
Score = 28.3 bits (60), Expect = 8.7
Identities = 24/83 (28%), Positives = 33/83 (39%), Gaps = 3/83 (3%)
Frame = -3
Query: 836 LTGAGQIPGGLPNGL---TVEYWTIANSPS*GPFPSNLI*PPERRNT*RCFSPDCSHCL* 666
+T A P L G T+ +W + PS P PS+L+ T C P CL
Sbjct: 19 ITAAAATPAALFTGAADGTILHWPLLPPPSPSPRPSSLLCAHAAAITSLCPLPSSPPCLL 78
Query: 665 FSDWELQVPLFSLFSALSVHKAC 597
S + LFS ++ S C
Sbjct: 79 ASCAAGVLSLFSSSASASASLRC 101
>05_06_0174 - 26149663-26149885,26150353-26151701
Length = 523
Score = 28.3 bits (60), Expect = 8.7
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -3
Query: 827 AGQIPGGLPNGLTVEYWTIANSPS*GPFPSNL 732
+G +P GL + L ++Y + N+P P PS L
Sbjct: 274 SGHLPAGLSDLLDLQYLIMENNPMGVPLPSEL 305
>03_02_0406 +
8182870-8184262,8184376-8184452,8184809-8184920,
8185064-8185071,8185633-8186217
Length = 724
Score = 28.3 bits (60), Expect = 8.7
Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Frame = +2
Query: 476 PLSKLQGQALGTYPKIT*NISFIGRLYLRWKRNFKRIHHLYKPCGLRVLKKEKKEGLV-I 652
P +Q Q G++P F+ +LY R K +H CG RV+ E+ L+
Sbjct: 573 PAEPIQ-QPHGSFPNSGPLPGFLPKLYKRGKGPNSLVHATALACGARVVPPEEAASLIKA 631
Query: 653 PNLKIKDSGSNRVK 694
KI+ G+ K
Sbjct: 632 IESKIRSGGATIAK 645
>02_05_0938 +
32901143-32901215,32901841-32901982,32902243-32902314,
32902573-32902644,32902711-32902782,32902913-32902948,
32903001-32903072,32903319-32903387,32903483-32903554,
32903668-32903739,32903838-32903909,32904153-32904224,
32904470-32904541,32904623-32904694,32904782-32904853,
32904911-32905003,32905150-32905218,32905315-32905386,
32905479-32905552,32905643-32905771,32905966-32906331,
32906584-32906954,32907522-32907890
Length = 884
Score = 28.3 bits (60), Expect = 8.7
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -3
Query: 824 GQIPGGLPNGLTVEYWTIANSPS*GPFPSNL 732
G IP L N T+ Y +AN+ GP P N+
Sbjct: 260 GSIPPELGNMSTLHYLNLANNNLEGPIPDNI 290
>02_05_0263 - 27257150-27259213
Length = 687
Score = 28.3 bits (60), Expect = 8.7
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = -1
Query: 178 KATVGSSFLCKLSIIPYITSWPRCSADTDAFP-LFNSKGTMAFWRTFFSG 32
+A V S ++ + I+ T RC A A L NSKGT A W SG
Sbjct: 161 RALVVSDYILETCIVNLYT---RCGAYQSAVATLQNSKGTAASWNAMLSG 207
>01_03_0271 +
14454681-14456949,14457222-14457476,14458800-14458864,
14459053-14459171,14459270-14459324
Length = 920
Score = 28.3 bits (60), Expect = 8.7
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = -1
Query: 163 SSFLCKLSIIPYITSWPRCSA-DTDAFPLFNSKGTMAFWRTFFSG 32
S + + SI+ + T RC A + A L NSKGT+A W SG
Sbjct: 283 SDDILETSIVNFYT---RCGAYQSAATVLQNSKGTVASWNALLSG 324
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,996,724
Number of Sequences: 37544
Number of extensions: 551042
Number of successful extensions: 1306
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1306
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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