Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30862
         (895 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3481| Best HMM Match : Viral_helicase1 (HMM E-Value=1.1)            38   0.011
SB_38760| Best HMM Match : Ras (HMM E-Value=4.6e-06)                   29   5.1  
SB_59580| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.7  

>SB_3481| Best HMM Match : Viral_helicase1 (HMM E-Value=1.1)
          Length = 1347

 Score = 37.9 bits (84), Expect = 0.011
 Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
 Frame = +1

Query: 502  TRNLSKDHMKYFFHWTALLKMEEK--FQTNSSPLQALWTESAEKREKRGTCNSQSEN*RQ 675
            T ++S  H ++F  W  L+ +E +   Q+  S   ++WT +A  REK G C S       
Sbjct: 876  TSHVSPTHCEFFADWFKLVCLEGQVILQSGRSSQHSIWTINAWDREKLGQCFSGMVLDST 935

Query: 676  WEQSGEKHLHVFRRS 720
              +   K++H F RS
Sbjct: 936  VPEHHGKYIHRFERS 950



 Score = 37.1 bits (82), Expect = 0.019
 Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 14/82 (17%)
 Frame = +3

Query: 3   KIDATLQVTVPEK-----------NVLQKAIVPLELKSGKASV---SAEHRGQLVMYGMM 140
           K+DAT++V +  +           N L  A VPLELK+GK      S EHR Q+++Y ++
Sbjct: 716 KVDATVEVKIDRRPMSRRHRPGMDNHLTTASVPLELKTGKLFSKLGSVEHRAQVILYTLL 775

Query: 141 LSLHRNEDPTVALQRGLLLYLR 206
           LS          +  GLL Y++
Sbjct: 776 LSDRYRH----GIDTGLLYYMK 793


>SB_38760| Best HMM Match : Ras (HMM E-Value=4.6e-06)
          Length = 965

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -2

Query: 201 NKATVHVVKPQWGL-RFCVSSASFHTL 124
           N+AT  ++KPQWGL  F   + +F TL
Sbjct: 180 NQATTRMIKPQWGLTSFDNKTVAFKTL 206


>SB_59580| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 999

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = +1

Query: 505  RNLSKDHMKYFFHWTALLKMEEKFQTNSSPLQALWTE-SAEKREKRGTCNSQSEN*RQWE 681
            R+ +KD  KYF  W +  K EE  + + + +Q L  +   E+ EK+    S  ++   W+
Sbjct: 833  RSKTKDAKKYFESWKS-KKDEELKEAHRAKMQELKKQKQKEEEEKQDKTLSSKKSFENWK 891

Query: 682  QSGEKHL 702
               +++L
Sbjct: 892  AKKDEYL 898


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,538,140
Number of Sequences: 59808
Number of extensions: 619215
Number of successful extensions: 1505
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1504
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2562198215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)