Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30862
(895 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D42046-1|BAA07647.1| 1077|Homo sapiens KIAA0083 protein. 54 7e-07
BC111740-1|AAI11741.1| 687|Homo sapiens DNA2L protein protein. 54 7e-07
BC063664-1|AAH63664.1| 829|Homo sapiens DNA2L protein protein. 54 7e-07
AL136233-5|CAI17238.1| 1040|Homo sapiens DNA2 DNA replication he... 54 7e-07
BC038103-1|AAH38103.1| 1092|Homo sapiens ubiquitin specific pept... 33 1.8
X59131-1|CAA41848.1| 1092|Homo sapiens hypothetical protein prot... 32 3.2
BC036027-1|AAH36027.1| 1092|Homo sapiens ubiquitin specific pept... 32 3.2
AL138681-1|CAH70264.1| 1092|Homo sapiens ubiquitin specific pept... 32 3.2
>D42046-1|BAA07647.1| 1077|Homo sapiens KIAA0083 protein.
Length = 1077
Score = 54.0 bits (124), Expect = 7e-07
Identities = 32/68 (47%), Positives = 42/68 (61%)
Frame = +3
Query: 3 KIDATLQVTVPEKNVLQKAIVPLELKSGKASVSAEHRGQLVMYGMMLSLHRNEDPTVALQ 182
KID T+ V + + I+PLELK+GK S S EHR Q+V+Y +LS R DP +
Sbjct: 292 KIDVTVGVKIHRGYKTKYKIMPLELKTGKESNSIEHRSQVVLY-TLLSQERRADP----E 346
Query: 183 RGLLLYLR 206
GLLLYL+
Sbjct: 347 AGLLLYLK 354
Score = 41.1 bits (92), Expect = 0.005
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +1
Query: 502 TRNLSKDHMKYFFHWTALLKMEEKFQTNSSPLQALWTESAEKREKRGTC 648
T++L + H++YF W +L +E + + N Q +W A + EK G+C
Sbjct: 447 TQHLKQTHLEYFSLWCLMLTLESQSKDNKKNHQNIWLMPASEMEKSGSC 495
>BC111740-1|AAI11741.1| 687|Homo sapiens DNA2L protein protein.
Length = 687
Score = 54.0 bits (124), Expect = 7e-07
Identities = 32/68 (47%), Positives = 42/68 (61%)
Frame = +3
Query: 3 KIDATLQVTVPEKNVLQKAIVPLELKSGKASVSAEHRGQLVMYGMMLSLHRNEDPTVALQ 182
KID T+ V + + I+PLELK+GK S S EHR Q+V+Y +LS R DP +
Sbjct: 275 KIDVTVGVKIHRGYKTKYKIMPLELKTGKESNSIEHRSQVVLY-TLLSQERRADP----E 329
Query: 183 RGLLLYLR 206
GLLLYL+
Sbjct: 330 AGLLLYLK 337
Score = 41.1 bits (92), Expect = 0.005
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +1
Query: 502 TRNLSKDHMKYFFHWTALLKMEEKFQTNSSPLQALWTESAEKREKRGTC 648
T++L + H++YF W +L +E + + N Q +W A + EK G+C
Sbjct: 430 TQHLKQTHLEYFSLWCLMLTLESQSKDNKKNHQNIWLMPASEMEKSGSC 478
>BC063664-1|AAH63664.1| 829|Homo sapiens DNA2L protein protein.
Length = 829
Score = 54.0 bits (124), Expect = 7e-07
Identities = 32/68 (47%), Positives = 42/68 (61%)
Frame = +3
Query: 3 KIDATLQVTVPEKNVLQKAIVPLELKSGKASVSAEHRGQLVMYGMMLSLHRNEDPTVALQ 182
KID T+ V + + I+PLELK+GK S S EHR Q+V+Y +LS R DP +
Sbjct: 282 KIDVTVGVKIHRGYKTKYKIMPLELKTGKESNSIEHRSQVVLY-TLLSQERRADP----E 336
Query: 183 RGLLLYLR 206
GLLLYL+
Sbjct: 337 AGLLLYLK 344
Score = 41.1 bits (92), Expect = 0.005
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +1
Query: 502 TRNLSKDHMKYFFHWTALLKMEEKFQTNSSPLQALWTESAEKREKRGTC 648
T++L + H++YF W +L +E + + N Q +W A + EK G+C
Sbjct: 437 TQHLKQTHLEYFSLWCLMLTLESQSKDNKKNHQNIWLMPASEMEKSGSC 485
>AL136233-5|CAI17238.1| 1040|Homo sapiens DNA2 DNA replication
helicase 2-like (yeast) protein.
Length = 1040
Score = 54.0 bits (124), Expect = 7e-07
Identities = 32/68 (47%), Positives = 42/68 (61%)
Frame = +3
Query: 3 KIDATLQVTVPEKNVLQKAIVPLELKSGKASVSAEHRGQLVMYGMMLSLHRNEDPTVALQ 182
KID T+ V + + I+PLELK+GK S S EHR Q+V+Y +LS R DP +
Sbjct: 275 KIDVTVGVKIHRGYKTKYKIMPLELKTGKESNSIEHRSQVVLY-TLLSQERRADP----E 329
Query: 183 RGLLLYLR 206
GLLLYL+
Sbjct: 330 AGLLLYLK 337
Score = 41.1 bits (92), Expect = 0.005
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +1
Query: 502 TRNLSKDHMKYFFHWTALLKMEEKFQTNSSPLQALWTESAEKREKRGTC 648
T++L + H++YF W +L +E + + N Q +W A + EK G+C
Sbjct: 430 TQHLKQTHLEYFSLWCLMLTLESQSKDNKKNHQNIWLMPASEMEKSGSC 478
>BC038103-1|AAH38103.1| 1092|Homo sapiens ubiquitin specific peptidase
like 1 protein.
Length = 1092
Score = 32.7 bits (71), Expect = 1.8
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = +2
Query: 284 ENLTSDPKDPDPEQLTDIEDASFLLQQKLPEPIN--HERACTKCPYLSICS 430
ENL P+D P IED L +LP PI+ +E ACT P +S+ S
Sbjct: 918 ENLEQVPQDGSPNDCESIED----LLNELPYPIDIANESACTTVPGVSLYS 964
>X59131-1|CAA41848.1| 1092|Homo sapiens hypothetical protein protein.
Length = 1092
Score = 31.9 bits (69), Expect = 3.2
Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +2
Query: 284 ENLTSDPKDPDPEQLTDIEDASFLLQQKLPEPIN--HERACTKCPYLSICS 430
ENL P+D P IED L +LP PI+ E ACT P +S+ S
Sbjct: 918 ENLEQVPQDGSPNDCESIED----LLNELPYPIDIASESACTTVPGVSLYS 964
>BC036027-1|AAH36027.1| 1092|Homo sapiens ubiquitin specific peptidase
like 1 protein.
Length = 1092
Score = 31.9 bits (69), Expect = 3.2
Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +2
Query: 284 ENLTSDPKDPDPEQLTDIEDASFLLQQKLPEPIN--HERACTKCPYLSICS 430
ENL P+D P IED L +LP PI+ E ACT P +S+ S
Sbjct: 918 ENLEQVPQDGSPNDCESIED----LLNELPYPIDIASESACTTVPGVSLYS 964
>AL138681-1|CAH70264.1| 1092|Homo sapiens ubiquitin specific peptidase
like 1 protein.
Length = 1092
Score = 31.9 bits (69), Expect = 3.2
Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +2
Query: 284 ENLTSDPKDPDPEQLTDIEDASFLLQQKLPEPIN--HERACTKCPYLSICS 430
ENL P+D P IED L +LP PI+ E ACT P +S+ S
Sbjct: 918 ENLEQVPQDGSPNDCESIED----LLNELPYPIDIASESACTTVPGVSLYS 964
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,996,123
Number of Sequences: 237096
Number of extensions: 3049413
Number of successful extensions: 6303
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6303
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11492727354
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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