Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30862
         (895 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT006332-1|AAP20828.1| 1054|Drosophila melanogaster LD18775p pro...    58   1e-08
AE014298-1398|AAN09623.1| 1100|Drosophila melanogaster CG2990-PB...    58   1e-08
AE014298-1397|AAF46543.1| 1119|Drosophila melanogaster CG2990-PA...    58   1e-08
X78113-1|CAA55003.1|  419|Drosophila melanogaster T48 protein.         29   6.5  
AY118853-1|AAM50713.1|  419|Drosophila melanogaster GM18993p pro...    29   6.5  
AE014297-4019|AAF56637.1|  419|Drosophila melanogaster CG5507-PA...    29   6.5  

>BT006332-1|AAP20828.1| 1054|Drosophila melanogaster LD18775p
           protein.
          Length = 1054

 Score = 58.4 bits (135), Expect = 1e-08
 Identities = 36/80 (45%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
 Frame = +3

Query: 18  LQVTVPEKNVLQKA-IVPLELKSGKASVSAEHRGQLVMYGMMLSLHRNEDPTVALQRGLL 194
           + V+V  KN  Q+  I+PLELK+G+AS S EH+GQL++Y +M S    +      Q GLL
Sbjct: 291 VDVSVKVKNQRQREEIIPLELKTGRASFSMEHKGQLLLYQLMHSAQGRD-----TQSGLL 345

Query: 195 LYLRDKVDVREVNCGYPERR 254
           LYL++ + +REV  G  E+R
Sbjct: 346 LYLKEGL-LREVASGRNEQR 364



 Score = 51.2 bits (117), Expect = 2e-06
 Identities = 33/83 (39%), Positives = 41/83 (49%)
 Frame = +2

Query: 257 LVMLRNQLVENLTSDPKDPDPEQLTDIEDASFLLQQKLPEPINHERACTKCPYLSICSVH 436
           L+MLRN L   LT +   P  +     ED   L Q  LPEP+ H  AC  C Y +ICS  
Sbjct: 366 LLMLRNDLAYWLTREVAIPASK-----EDP--LEQLPLPEPVYHHSACGNCAYNTICSSF 418

Query: 437 LWHSGGPSVSENHPLSKLQGQAL 505
                   +S++HPL KL  Q L
Sbjct: 419 AQKDSSLQLSDSHPLKKLMPQLL 441



 Score = 39.9 bits (89), Expect = 0.005
 Identities = 17/45 (37%), Positives = 26/45 (57%)
 Frame = +1

Query: 508 NLSKDHMKYFFHWTALLKMEEKFQTNSSPLQALWTESAEKREKRG 642
           +LS+    Y  HW  LL +EE+    SS +++ WT+   +REK G
Sbjct: 443 HLSEADHAYVQHWCGLLALEEQHNRQSSHVRSFWTKDPAEREKEG 487


>AE014298-1398|AAN09623.1| 1100|Drosophila melanogaster CG2990-PB,
           isoform B protein.
          Length = 1100

 Score = 58.4 bits (135), Expect = 1e-08
 Identities = 36/80 (45%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
 Frame = +3

Query: 18  LQVTVPEKNVLQKA-IVPLELKSGKASVSAEHRGQLVMYGMMLSLHRNEDPTVALQRGLL 194
           + V+V  KN  Q+  I+PLELK+G+AS S EH+GQL++Y +M S    +      Q GLL
Sbjct: 291 VDVSVKVKNQRQREEIIPLELKTGRASFSMEHKGQLLLYQLMHSAQGRD-----TQSGLL 345

Query: 195 LYLRDKVDVREVNCGYPERR 254
           LYL++ + +REV  G  E+R
Sbjct: 346 LYLKEGL-LREVASGRNEQR 364



 Score = 51.2 bits (117), Expect = 2e-06
 Identities = 33/83 (39%), Positives = 41/83 (49%)
 Frame = +2

Query: 257 LVMLRNQLVENLTSDPKDPDPEQLTDIEDASFLLQQKLPEPINHERACTKCPYLSICSVH 436
           L+MLRN L   LT +   P  +     ED   L Q  LPEP+ H  AC  C Y +ICS  
Sbjct: 366 LLMLRNDLAYWLTREVAIPASK-----EDP--LEQLPLPEPVYHHSACGNCAYNTICSSF 418

Query: 437 LWHSGGPSVSENHPLSKLQGQAL 505
                   +S++HPL KL  Q L
Sbjct: 419 AQKDSSLQLSDSHPLKKLMPQLL 441



 Score = 39.9 bits (89), Expect = 0.005
 Identities = 17/45 (37%), Positives = 26/45 (57%)
 Frame = +1

Query: 508 NLSKDHMKYFFHWTALLKMEEKFQTNSSPLQALWTESAEKREKRG 642
           +LS+    Y  HW  LL +EE+    SS +++ WT+   +REK G
Sbjct: 443 HLSEADHAYVQHWCGLLALEEQHNRQSSHVRSFWTKDPAEREKEG 487


>AE014298-1397|AAF46543.1| 1119|Drosophila melanogaster CG2990-PA,
           isoform A protein.
          Length = 1119

 Score = 58.4 bits (135), Expect = 1e-08
 Identities = 36/80 (45%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
 Frame = +3

Query: 18  LQVTVPEKNVLQKA-IVPLELKSGKASVSAEHRGQLVMYGMMLSLHRNEDPTVALQRGLL 194
           + V+V  KN  Q+  I+PLELK+G+AS S EH+GQL++Y +M S    +      Q GLL
Sbjct: 310 VDVSVKVKNQRQREEIIPLELKTGRASFSMEHKGQLLLYQLMHSAQGRD-----TQSGLL 364

Query: 195 LYLRDKVDVREVNCGYPERR 254
           LYL++ + +REV  G  E+R
Sbjct: 365 LYLKEGL-LREVASGRNEQR 383



 Score = 51.2 bits (117), Expect = 2e-06
 Identities = 33/83 (39%), Positives = 41/83 (49%)
 Frame = +2

Query: 257 LVMLRNQLVENLTSDPKDPDPEQLTDIEDASFLLQQKLPEPINHERACTKCPYLSICSVH 436
           L+MLRN L   LT +   P  +     ED   L Q  LPEP+ H  AC  C Y +ICS  
Sbjct: 385 LLMLRNDLAYWLTREVAIPASK-----EDP--LEQLPLPEPVYHHSACGNCAYNTICSSF 437

Query: 437 LWHSGGPSVSENHPLSKLQGQAL 505
                   +S++HPL KL  Q L
Sbjct: 438 AQKDSSLQLSDSHPLKKLMPQLL 460



 Score = 39.9 bits (89), Expect = 0.005
 Identities = 17/45 (37%), Positives = 26/45 (57%)
 Frame = +1

Query: 508 NLSKDHMKYFFHWTALLKMEEKFQTNSSPLQALWTESAEKREKRG 642
           +LS+    Y  HW  LL +EE+    SS +++ WT+   +REK G
Sbjct: 462 HLSEADHAYVQHWCGLLALEEQHNRQSSHVRSFWTKDPAEREKEG 506


>X78113-1|CAA55003.1|  419|Drosophila melanogaster T48 protein.
          Length = 419

 Score = 29.5 bits (63), Expect = 6.5
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +3

Query: 72  ELKSGKASVSAEHRGQLVMYGMMLSLHRNEDP 167
           EL +G  S SA  + +L ++G ++SLH  E+P
Sbjct: 340 ELMAGDRSSSASAQQKLHLFGSLISLHEFEEP 371


>AY118853-1|AAM50713.1|  419|Drosophila melanogaster GM18993p
           protein.
          Length = 419

 Score = 29.5 bits (63), Expect = 6.5
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +3

Query: 72  ELKSGKASVSAEHRGQLVMYGMMLSLHRNEDP 167
           EL +G  S SA  + +L ++G ++SLH  E+P
Sbjct: 340 ELMAGDRSSSASAQQKLHLFGSLISLHEFEEP 371


>AE014297-4019|AAF56637.1|  419|Drosophila melanogaster CG5507-PA
           protein.
          Length = 419

 Score = 29.5 bits (63), Expect = 6.5
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +3

Query: 72  ELKSGKASVSAEHRGQLVMYGMMLSLHRNEDP 167
           EL +G  S SA  + +L ++G ++SLH  E+P
Sbjct: 340 ELMAGDRSSSASAQQKLHLFGSLISLHEFEEP 371


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,380,041
Number of Sequences: 53049
Number of extensions: 921223
Number of successful extensions: 2286
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2286
length of database: 24,988,368
effective HSP length: 85
effective length of database: 20,479,203
effective search space used: 4341591036
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)