Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30862
         (895 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50070-2|CAB54253.1| 1069|Caenorhabditis elegans Hypothetical pr...    43   3e-04
Z50070-1|CAA90399.1| 1105|Caenorhabditis elegans Hypothetical pr...    43   3e-04
AL021491-4|CAA16374.2|  324|Caenorhabditis elegans Hypothetical ...    31   1.5  
U20864-11|AAV58867.1|  583|Caenorhabditis elegans C. elegans ADA...    30   2.6  
U20864-10|AAK68355.1|  596|Caenorhabditis elegans C. elegans ADA...    30   2.6  
U58752-5|AAO38681.1|  507|Caenorhabditis elegans Hypothetical pr...    29   4.5  
U58752-4|AAB00667.1|  572|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z48006-1|CAA88047.1|  642|Caenorhabditis elegans Hypothetical pr...    28   7.8  
U39854-2|AAA81077.2|  703|Caenorhabditis elegans Puf (pumilio/fb...    28   7.8  
AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical...    28   7.8  
AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical ...    28   7.8  

>Z50070-2|CAB54253.1| 1069|Caenorhabditis elegans Hypothetical
           protein F43G6.1b protein.
          Length = 1069

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 24/47 (51%), Positives = 33/47 (70%)
 Frame = +3

Query: 69  LELKSGKASVSAEHRGQLVMYGMMLSLHRNEDPTVALQRGLLLYLRD 209
           LELK+GK+S S+EH GQ+++Y MM S  R E P   +  G +LYL+D
Sbjct: 334 LELKTGKSSCSSEHTGQVLLYCMMQS-SRYEQP---IGPGNILYLKD 376



 Score = 29.1 bits (62), Expect = 4.5
 Identities = 26/116 (22%), Positives = 51/116 (43%), Gaps = 2/116 (1%)
 Frame = +2

Query: 368 LPEPINHERACTKCPYLSICSVHLWHSGGPSVSENHPLSKLQGQ-ALGTYPKIT*NISFI 544
           LP+P    R C KC + ++CS +       S S +   +  + + A      I    ++I
Sbjct: 411 LPDPRQDSRFCDKCDHKTMCSFYQKTEENFSKSNDKMKNFAENEMAHLEQNHIEYAANWI 470

Query: 545 GRLYLRWKRNFKRIHHLYKPCGLRVLKKEKKEGLVIPNL-KIKDSGSNRVKNIFTY 709
             +   WK   +R+    K   L+ +++  +EG  + +L  + +  SN  K I ++
Sbjct: 471 RWISAEWKCERERMTSQNKDLWLKSVQERVEEGTCLSDLHPVSEEMSNSQKIIISF 526


>Z50070-1|CAA90399.1| 1105|Caenorhabditis elegans Hypothetical
           protein F43G6.1a protein.
          Length = 1105

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 24/47 (51%), Positives = 33/47 (70%)
 Frame = +3

Query: 69  LELKSGKASVSAEHRGQLVMYGMMLSLHRNEDPTVALQRGLLLYLRD 209
           LELK+GK+S S+EH GQ+++Y MM S  R E P   +  G +LYL+D
Sbjct: 370 LELKTGKSSCSSEHTGQVLLYCMMQS-SRYEQP---IGPGNILYLKD 412



 Score = 29.1 bits (62), Expect = 4.5
 Identities = 26/116 (22%), Positives = 51/116 (43%), Gaps = 2/116 (1%)
 Frame = +2

Query: 368 LPEPINHERACTKCPYLSICSVHLWHSGGPSVSENHPLSKLQGQ-ALGTYPKIT*NISFI 544
           LP+P    R C KC + ++CS +       S S +   +  + + A      I    ++I
Sbjct: 447 LPDPRQDSRFCDKCDHKTMCSFYQKTEENFSKSNDKMKNFAENEMAHLEQNHIEYAANWI 506

Query: 545 GRLYLRWKRNFKRIHHLYKPCGLRVLKKEKKEGLVIPNL-KIKDSGSNRVKNIFTY 709
             +   WK   +R+    K   L+ +++  +EG  + +L  + +  SN  K I ++
Sbjct: 507 RWISAEWKCERERMTSQNKDLWLKSVQERVEEGTCLSDLHPVSEEMSNSQKIIISF 562


>AL021491-4|CAA16374.2|  324|Caenorhabditis elegans Hypothetical
           protein Y44A6B.2 protein.
          Length = 324

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
 Frame = +2

Query: 410 PYLSICSVHLWHSG----GPSVSENHPLSKLQGQALGTYPKIT*NISFIGRLYLRWKR 571
           P+LS C V++        G    E HP++ +Q   L   P IT +I+ I  LYL  KR
Sbjct: 137 PFLSSCPVNINQRNLSFQGDCHEEIHPITAIQNNYLILIPVITMSINAIVLLYLAAKR 194


>U20864-11|AAV58867.1|  583|Caenorhabditis elegans C. elegans ADA-2
           protein, isoform b protein.
          Length = 583

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = +1

Query: 613 ESAEKREKRGTCNS--QSEN*RQWEQSGEKHLHVFRR 717
           E  EK+ KRGT +S  + +  R W    ++ LH FR+
Sbjct: 318 EEEEKKPKRGTASSSKRRKRRRMWVSKKDRRLHEFRK 354


>U20864-10|AAK68355.1|  596|Caenorhabditis elegans C. elegans ADA-2
           protein, isoform a protein.
          Length = 596

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = +1

Query: 613 ESAEKREKRGTCNS--QSEN*RQWEQSGEKHLHVFRR 717
           E  EK+ KRGT +S  + +  R W    ++ LH FR+
Sbjct: 331 EEEEKKPKRGTASSSKRRKRRRMWVSKKDRRLHEFRK 367


>U58752-5|AAO38681.1|  507|Caenorhabditis elegans Hypothetical
           protein B0218.1b protein.
          Length = 507

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +2

Query: 122 RNVWNDAELTQKRRPHCGFTTWTVALFERQSRREGG 229
           RNVW D +    R P+C    W  +++  + +   G
Sbjct: 227 RNVWGDIDFQSDRDPYCPPVHWNESVYSSEKKLRVG 262


>U58752-4|AAB00667.1|  572|Caenorhabditis elegans Hypothetical
           protein B0218.1a protein.
          Length = 572

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +2

Query: 122 RNVWNDAELTQKRRPHCGFTTWTVALFERQSRREGG 229
           RNVW D +    R P+C    W  +++  + +   G
Sbjct: 292 RNVWGDIDFQSDRDPYCPPVHWNESVYSSEKKLRVG 327


>Z48006-1|CAA88047.1|  642|Caenorhabditis elegans Hypothetical
           protein F19C6.1 protein.
          Length = 642

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -2

Query: 852 HFHRLINWSWTNSRRVTQRSYR 787
           +FHR + W W   R V + ++R
Sbjct: 183 YFHRFLQWKWLEKRPVDKHTFR 204


>U39854-2|AAA81077.2|  703|Caenorhabditis elegans Puf (pumilio/fbf)
           domain-containingprotein 9 protein.
          Length = 703

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
 Frame = +2

Query: 269 RNQLVENLTSDPKDPDPEQLTDIED--ASFLLQQKL 370
           RN +++ +  DP DP P  L  ++D  A++++Q+ L
Sbjct: 593 RNLIIDKVCGDPNDPSPPLLQMMKDPFANYVVQKML 628


>AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical
           protein Y64G10A.7 protein.
          Length = 1651

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
 Frame = +2

Query: 392 RACTKCPYLSI---CSVHLWHSGGPSVSENH 475
           R C+KC  L +   CS  L H+GG  V   H
Sbjct: 65  RGCSKCCLLRVQANCSADLCHNGGTCVPSEH 95


>AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical
           protein Y64G10A.7 protein.
          Length = 1651

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
 Frame = +2

Query: 392 RACTKCPYLSI---CSVHLWHSGGPSVSENH 475
           R C+KC  L +   CS  L H+GG  V   H
Sbjct: 65  RGCSKCCLLRVQANCSADLCHNGGTCVPSEH 95


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,346,986
Number of Sequences: 27780
Number of extensions: 466825
Number of successful extensions: 1110
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1108
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)