Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30862
         (895 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          26   0.53 
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      26   0.53 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   5.0  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   5.0  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 25.8 bits (54), Expect = 0.53
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +2

Query: 569 RNFKRIHHLYKPCGLRVLKKEKKEGLVIPNLKIKDSGSNRVKNIFTYFDVQV 724
           R +KRI   Y    +   K   K+ ++ PNLKI+    +++   F  FD  +
Sbjct: 420 RIYKRIIDYYHSYKMHQ-KPYNKDEIIYPNLKIESFTVDKLITYFEQFDTTI 470


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 25.8 bits (54), Expect = 0.53
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +2

Query: 569 RNFKRIHHLYKPCGLRVLKKEKKEGLVIPNLKIKDSGSNRVKNIFTYFDVQV 724
           R +KRI   Y    +   K   K+ ++ PNLKI+    +++   F  FD  +
Sbjct: 420 RIYKRIIDYYHSYKMHQ-KPYNKDEIIYPNLKIESFTVDKLITYFEQFDTTI 470


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 99  SAEHRGQLVMYGMMLSLHRNEDPTVA 176
           SAEH  +L +YG+    H ++   VA
Sbjct: 479 SAEHSARLNVYGLPFIRHMDKKAIVA 504


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -1

Query: 775 LLRTPLLEALSPLI*SNHLNVEIREDVFHPIAPTV 671
           LL T +L  LS +I    LNV  R+   H +AP V
Sbjct: 302 LLFTMILVGLSVVITIVILNVHYRKPSTHKMAPWV 336


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 254,687
Number of Sequences: 438
Number of extensions: 6159
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28904421
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)