Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30862
         (895 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g08840.1 68414.m00984 DNA replication helicase, putative simi...    42   6e-04
At2g47350.1 68415.m05911 PAPA-1-like family protein / zinc finge...    32   0.59 
At2g07734.1 68415.m00983 ribosomal protein S4 (RPS4) identical t...    31   0.78 
At4g05633.1 68417.m00876 hypothetical protein                          30   1.8  
At3g57550.1 68416.m06408 guanylate kinase 2 (GK-2) identical to ...    29   4.2  
At5g60270.1 68418.m07554 lectin protein kinase family protein co...    28   9.6  
At4g27910.1 68417.m04006 PHD finger protein-related / SET domain...    28   9.6  
At3g23350.1 68416.m02945 expressed protein ; expression supporte...    28   9.6  

>At1g08840.1 68414.m00984 DNA replication helicase, putative similar
           to helicase [Xenopus laevis] gi|18845092|gb|AAL79550
          Length = 1296

 Score = 41.9 bits (94), Expect = 6e-04
 Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 4/71 (5%)
 Frame = +3

Query: 6   IDATLQVTVP-EKNVLQKAIVPLELKSGKA---SVSAEHRGQLVMYGMMLSLHRNEDPTV 173
           IDA+++V V  + N + + I+PLE KSGKA     S EH  Q+++Y +++S    E    
Sbjct: 537 IDASVRVIVESDMNTVNEKIMPLEFKSGKAPSGQSSIEHSAQVILYTLLMS----ERYLK 592

Query: 174 ALQRGLLLYLR 206
            +  GLL YL+
Sbjct: 593 HIDNGLLYYLQ 603


>At2g47350.1 68415.m05911 PAPA-1-like family protein / zinc finger
           (HIT type) family protein contains Pfam domains,
           PF04795: PAPA-1-like conserved region and PF04438: HIT
           zinc finger
          Length = 486

 Score = 31.9 bits (69), Expect = 0.59
 Identities = 27/74 (36%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
 Frame = -3

Query: 803 PNGLTVEYWTIANSPS*-GPFPSNLI*PPERRNT*RCFSPDCSHCL*FSDWELQVPLFSL 627
           PNG TV +  I   PS   P PS    PP R N   C  P C++   + D + +VPL S 
Sbjct: 419 PNGTTVSF-PIDKVPSLFDPKPSGY--PPPREN---CVGPSCTNPYKYRDSKTKVPLCS- 471

Query: 626 FSALSVHKACKGDE 585
              L  +KA +G +
Sbjct: 472 ---LKCYKAVQGQQ 482


>At2g07734.1 68415.m00983 ribosomal protein S4 (RPS4) identical to
           small ribosomal protein 4 [Arabidopsis thaliana]
           GI:1460051
          Length = 362

 Score = 31.5 bits (68), Expect = 0.78
 Identities = 32/115 (27%), Positives = 50/115 (43%), Gaps = 8/115 (6%)
 Frame = +2

Query: 314 DPEQLTDIEDASFLLQQKLPE---PINHERACTKCPYLSICSVHLWHSGGPSVSENHPLS 484
           +PE   D+        + +P+   PI+H R C     +SI    L H    S  EN+ + 
Sbjct: 102 NPETRFDVIPLRLHFLETIPQARQPISHRRVCVNKGMVSITHFKLSHGDIISFQENNAII 161

Query: 485 KLQGQALGTYPKIT*NISFIGRLY---LR-WKRNFKRIHHLYK-PCGLRVLKKEK 634
           + +      Y +I+     IG+L    LR W+R+     HL K   G R+L K +
Sbjct: 162 RGEEIRRSFYKEISVE-KIIGKLLHQPLRMWRRSKTEWFHLLKTKRGCRLLLKSR 215


>At4g05633.1 68417.m00876 hypothetical protein
          Length = 376

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = +2

Query: 584 IHHLYKPCGLRVLKKEK--KEGLVIPNLKIKDSGSNRVKNI 700
           + HLY+   L  ++KEK  K GL+ P+ K     SN+VKN+
Sbjct: 240 VQHLYQSLSLNSIEKEKTFKIGLLDPHRK--SESSNQVKNV 278


>At3g57550.1 68416.m06408 guanylate kinase 2 (GK-2) identical to
           guanylate kinase (GK-2) [Arabidopsis thaliana]
           gi|7861798|gb|AAF70409
          Length = 389

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +1

Query: 169 LWLYNVDCCFI*ETK*T*GRLTVDTQRGALGNAEESV 279
           +W   VD  FI E K   GR  V   +G  GNAE+ +
Sbjct: 104 IWFLEVDTPFIREQKKLLGREVVAWSKGVRGNAEKPI 140


>At5g60270.1 68418.m07554 lectin protein kinase family protein
           contains Pfam domains, PF00069: Protein kinase domain,
           PF00139: Legume lectins beta domain, and PF00138: Legume
           lectins alpha domain
          Length = 668

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 13/62 (20%), Positives = 28/62 (45%)
 Frame = +3

Query: 54  KAIVPLELKSGKASVSAEHRGQLVMYGMMLSLHRNEDPTVALQRGLLLYLRDKVDVREVN 233
           + ++  ++K+    + AE  G+L  +GM     R  DP+     G + Y+  ++     +
Sbjct: 462 QVVIHRDIKAANVMLDAEFNGRLGDFGMSRLYDRGADPSTTAAVGTVGYMAPELTTMGAS 521

Query: 234 CG 239
            G
Sbjct: 522 TG 523


>At4g27910.1 68417.m04006 PHD finger protein-related / SET
           domain-containing protein (TX4) nearly identical over
           285 amino acids to trithorax 4 [Arabidopsis thaliana]
           GI:16118405; contains Pfam profiles PF00856: SET domain,
           PF00855: PWWP domain; identical to cDNA trithorax 4
           (TX4) partial cds GI:16118404
          Length = 1027

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = -3

Query: 683 CSHCL*FSDWELQVPLFSLFSALSVHKACKGDEFV*NFSSILSKAVQ 543
           C+ C    DW+    +      ++VH+ C G   V +F+S + KA +
Sbjct: 595 CAVCRWVEDWDYNKIIICNRCQIAVHQECYGARHVRDFTSWVCKACE 641


>At3g23350.1 68416.m02945 expressed protein ; expression supported
           by MPSS
          Length = 225

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +2

Query: 278 LVENLTS-DPKDPDPEQLTDIEDASF 352
           LVE +T+ DP  PD + +T I +ASF
Sbjct: 37  LVEEVTNGDPSSPDAKTMTKIAEASF 62


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,217,482
Number of Sequences: 28952
Number of extensions: 439359
Number of successful extensions: 1182
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1181
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2100696768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)