Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30861
(810 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 155 9e-39
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 153 2e-38
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 136 3e-33
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 107 1e-24
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 104 1e-23
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 77 3e-15
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe... 66 4e-12
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 62 7e-11
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc... 29 1.0
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 28 1.4
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1... 27 2.4
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 26 5.5
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ... 26 5.5
SPCC320.09 |hem15||ferrochelatase|Schizosaccharomyces pombe|chr ... 26 5.5
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po... 26 5.5
SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|ch... 26 7.3
SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces p... 25 9.6
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom... 25 9.6
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |... 25 9.6
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 155 bits (375), Expect = 9e-39
Identities = 71/89 (79%), Positives = 82/89 (92%)
Frame = +2
Query: 5 NVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDL 184
NVLIFDLGGGTFDVS+LTIE+GIFEVK+TAGDTHLGGEDFD+R+VNHF+QEFKRK KKD+
Sbjct: 192 NVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDSRLVNHFIQEFKRKNKKDI 251
Query: 185 ATNKRALMRLRTACERAKRTLSSSHKRAL 271
N RA+ RLRTACERAKRTLSSS + ++
Sbjct: 252 TGNARAVRRLRTACERAKRTLSSSAQASI 280
Score = 142 bits (344), Expect = 5e-35
Identities = 69/88 (78%), Positives = 77/88 (87%)
Frame = +1
Query: 235 KEDLVIVTQASIEIDSLFEGIDFYTSITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQ 414
K L QASIEIDSLFEGIDFYTSITRARFEEL ADLFR TMEPVE+ LRD+K+DKA
Sbjct: 269 KRTLSSSAQASIEIDSLFEGIDFYTSITRARFEELCADLFRKTMEPVERVLRDSKVDKAS 328
Query: 415 IHDIVLVGGSTRIPKVQKLLQDFFNGKE 498
+++IVLVGGSTRIP+VQKL+ DFFNGKE
Sbjct: 329 VNEIVLVGGSTRIPRVQKLVSDFFNGKE 356
Score = 40.7 bits (91), Expect = 2e-04
Identities = 20/37 (54%), Positives = 22/37 (59%)
Frame = +3
Query: 510 INPDEXXXXXXXXXXXILHGDKSEEVQDLLLLDVTPL 620
INPDE +L GD SE+ QDLLLLDV PL
Sbjct: 361 INPDEAVAYGAAVQAAVLTGDTSEKTQDLLLLDVAPL 397
Score = 30.3 bits (65), Expect = 0.34
Identities = 21/52 (40%), Positives = 26/52 (50%)
Frame = +2
Query: 617 PFPSGIENSGGVMNHTSSSVNTTIPN*NRLQTFHQPNS**PNPGYSIQVFKG 772
P GIE +GGVM NTTIP + + F + PG IQVF+G
Sbjct: 396 PLSMGIETAGGVMTPLIKR-NTTIPT-KKSEIFSTYSD--NQPGVLIQVFEG 443
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 153 bits (372), Expect = 2e-38
Identities = 71/89 (79%), Positives = 81/89 (91%)
Frame = +2
Query: 5 NVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDL 184
NVLIFDLGGGTFDVS+LTIE+GIFEVK+TAGDTHLGGEDFD+R+VNHF QEFKRK KKD+
Sbjct: 192 NVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDSRLVNHFAQEFKRKNKKDI 251
Query: 185 ATNKRALMRLRTACERAKRTLSSSHKRAL 271
N RA+ RLRTACERAKRTLSSS + ++
Sbjct: 252 TGNARAVRRLRTACERAKRTLSSSAQASI 280
Score = 141 bits (341), Expect = 1e-34
Identities = 67/88 (76%), Positives = 78/88 (88%)
Frame = +1
Query: 235 KEDLVIVTQASIEIDSLFEGIDFYTSITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQ 414
K L QASIEIDSL+EGIDFYTSITRARFEEL ADLFR+TMEPVEK LRD+K+DK+
Sbjct: 269 KRTLSSSAQASIEIDSLYEGIDFYTSITRARFEELCADLFRNTMEPVEKVLRDSKIDKSS 328
Query: 415 IHDIVLVGGSTRIPKVQKLLQDFFNGKE 498
+++IVLVGGSTRIP++QKL+ DFFNGKE
Sbjct: 329 VNEIVLVGGSTRIPRIQKLVSDFFNGKE 356
Score = 40.7 bits (91), Expect = 2e-04
Identities = 21/37 (56%), Positives = 22/37 (59%)
Frame = +3
Query: 510 INPDEXXXXXXXXXXXILHGDKSEEVQDLLLLDVTPL 620
INPDE IL GD SE+ QDLLLLDV PL
Sbjct: 361 INPDEAVAYGAAVQAAILVGDTSEKTQDLLLLDVAPL 397
Score = 29.1 bits (62), Expect = 0.78
Identities = 21/52 (40%), Positives = 25/52 (48%)
Frame = +2
Query: 617 PFPSGIENSGGVMNHTSSSVNTTIPN*NRLQTFHQPNS**PNPGYSIQVFKG 772
P GIE +GGVM NTTIP + + F PG IQVF+G
Sbjct: 396 PLSLGIETAGGVMTPLIKR-NTTIPT-KKSEVFSTYAD--NQPGVLIQVFEG 443
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 136 bits (329), Expect = 3e-33
Identities = 62/84 (73%), Positives = 73/84 (86%)
Frame = +2
Query: 2 RNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKD 181
+NVLIFDLGGGTFDVS+L I+ G+FEV +TAGDTHLGGEDFDN +V HF+QEFKRK K D
Sbjct: 195 KNVLIFDLGGGTFDVSLLKIQGGVFEVLATAGDTHLGGEDFDNALVEHFIQEFKRKQKID 254
Query: 182 LATNKRALMRLRTACERAKRTLSS 253
++ + RAL RLR+ACERAKR LSS
Sbjct: 255 ISDDPRALRRLRSACERAKRALSS 278
Score = 125 bits (301), Expect = 9e-30
Identities = 57/91 (62%), Positives = 75/91 (82%)
Frame = +1
Query: 235 KEDLVIVTQASIEIDSLFEGIDFYTSITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQ 414
K L VTQ ++E+DSL GIDF +SITRARFE++NA F++T++PV K L+D+K+ KA
Sbjct: 273 KRALSSVTQTTVEVDSLSNGIDFSSSITRARFEDINATTFKATIDPVAKVLKDSKVPKAD 332
Query: 415 IHDIVLVGGSTRIPKVQKLLQDFFNGKELNK 507
+HDIVLVGGSTRIPKVQ+L+ DFF+G+ LNK
Sbjct: 333 VHDIVLVGGSTRIPKVQRLVSDFFDGRALNK 363
Score = 30.3 bits (65), Expect = 0.34
Identities = 29/82 (35%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Frame = +3
Query: 510 INPDEXXXXXXXXXXXILHGDK-SEEVQDLLLLDVTPLFPRVLRILEVS*TTLHQALTLP 686
INPDE +L S++ QDLLLLDV PL V V + +P
Sbjct: 365 INPDEAVAYGAAVQAAVLTNKADSDKTQDLLLLDVVPLSLGVAMEGNVFGVVCPRNTPIP 424
Query: 687 SPIKTDFRHFTNLTLDNQTRGT 752
+ K R FT + DNQT T
Sbjct: 425 TIKK---RTFTTVA-DNQTTVT 442
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 107 bits (258), Expect = 1e-24
Identities = 44/84 (52%), Positives = 69/84 (82%)
Frame = +2
Query: 2 RNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKD 181
++++++DLGGGTFDVS+L+I++G+FEV +T+GDTHLGGEDFDNR++N+ + + RK D
Sbjct: 223 KHIVVYDLGGGTFDVSLLSIDNGVFEVLATSGDTHLGGEDFDNRVINYLARTYNRKNNVD 282
Query: 182 LATNKRALMRLRTACERAKRTLSS 253
+ + +A+ +L+ E+AKRTLSS
Sbjct: 283 VTKDLKAMGKLKREVEKAKRTLSS 306
Score = 102 bits (244), Expect = 7e-23
Identities = 49/93 (52%), Positives = 69/93 (74%)
Frame = +1
Query: 229 EGKEDLVIVTQASIEIDSLFEGIDFYTSITRARFEELNADLFRSTMEPVEKSLRDAKMDK 408
+ K L IEI+S F G DF +++RA+FEE+N DLF+ T++PVE+ L+D+ + K
Sbjct: 299 KAKRTLSSQKSVRIEIESFFNGQDFSETLSRAKFEEINMDLFKKTLKPVEQVLKDSNLKK 358
Query: 409 AQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNK 507
++I DIVLVGGSTRIPKVQ+LL+ FF GK+ +K
Sbjct: 359 SEIDDIVLVGGSTRIPKVQELLESFF-GKKASK 390
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 104 bits (250), Expect = 1e-23
Identities = 48/85 (56%), Positives = 63/85 (74%)
Frame = +2
Query: 8 VLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLA 187
V +FDLGGGTFD+SIL + +G+FEV+ST GDTHLGGEDFD +V H V+ FK+ DL+
Sbjct: 237 VAVFDLGGGTFDISILELNNGVFEVRSTNGDTHLGGEDFDVALVRHIVETFKKNEGLDLS 296
Query: 188 TNKRALMRLRTACERAKRTLSSSHK 262
++ A+ R+R A E+AK LSS K
Sbjct: 297 KDRLAVQRIREAAEKAKCELSSLSK 321
Score = 57.2 bits (132), Expect = 3e-09
Identities = 23/58 (39%), Positives = 44/58 (75%)
Frame = +1
Query: 313 ITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFF 486
I+RA+FE+L L R T++P +++L+DA + ++I++++LVGG TR+P+V + ++ F
Sbjct: 343 ISRAQFEKLVDPLVRRTIDPCKRALKDANLQTSEINEVILVGGMTRMPRVVETVKSIF 400
Score = 28.7 bits (61), Expect = 1.0
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = +3
Query: 510 INPDEXXXXXXXXXXXILHGDKSEEVQDLLLLDVTPL 620
+NPDE +L G V+DL+LLDVTPL
Sbjct: 408 VNPDEAVAIGAAIQGGVLSG----HVKDLVLLDVTPL 440
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 77.0 bits (181), Expect = 3e-15
Identities = 36/85 (42%), Positives = 51/85 (60%)
Frame = +2
Query: 2 RNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKD 181
R V I D G + VSI+ G F +KST D +LG + D ++++F EFK KYK D
Sbjct: 199 RRVAIVDFGHSNYSVSIVEFSRGQFHIKSTVCDRNLGSRNMDKALIDYFAAEFKEKYKID 258
Query: 182 LATNKRALMRLRTACERAKRTLSSS 256
+ +N +A RL TA ER K+ LS++
Sbjct: 259 VLSNPKATFRLATAVERLKKVLSAN 283
Score = 54.8 bits (126), Expect = 1e-08
Identities = 30/90 (33%), Positives = 51/90 (56%)
Frame = +1
Query: 235 KEDLVIVTQASIEIDSLFEGIDFYTSITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQ 414
K+ L A + ++ + ID + I R+ FEEL L P+EK+L A + K
Sbjct: 277 KKVLSANANAPLNVEMIMNDIDASSFIKRSDFEELIKPLLERLTPPIEKALELAGIKKED 336
Query: 415 IHDIVLVGGSTRIPKVQKLLQDFFNGKELN 504
++ I +VGG TR+P V++++ ++F GK L+
Sbjct: 337 LYSIEMVGGCTRVPIVKEVIANYF-GKGLS 365
>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 848
Score = 66.5 bits (155), Expect = 4e-12
Identities = 30/84 (35%), Positives = 54/84 (64%)
Frame = +1
Query: 256 TQASIEIDSLFEGIDFYTSITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQIHDIVLV 435
++A I+ L +GIDF ITR+ E L D+ + +EP+ K+L+ A + ++I+ I+L
Sbjct: 312 SEAIASIEELADGIDFRLKITRSVLESLCKDMEDAAVEPINKALKKANLTFSEINSIILF 371
Query: 436 GGSTRIPKVQKLLQDFFNGKELNK 507
GG++RIP +Q L D+ + +++K
Sbjct: 372 GGASRIPFIQSTLADYVSSDKISK 395
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 62.5 bits (145), Expect = 7e-11
Identities = 28/84 (33%), Positives = 51/84 (60%)
Frame = +2
Query: 2 RNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKD 181
+ V++ + G +VS+++++ G+ + ++ D +LGGE + +VN F +EF++K D
Sbjct: 217 KTVVVANFGATRSEVSVVSVKGGLMTILASVHDENLGGEQLTDVLVNFFAKEFEKKNGID 276
Query: 182 LATNKRALMRLRTACERAKRTLSS 253
N R+L +LR CE KR LS+
Sbjct: 277 PRKNARSLAKLRAQCEITKRVLSN 300
Score = 56.0 bits (129), Expect = 6e-09
Identities = 25/77 (32%), Positives = 45/77 (58%)
Frame = +1
Query: 256 TQASIEIDSLFEGIDFYTSITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQIHDIVLV 435
T AS +DSL +GIDF++SI R R++ + + V +++ A M+ I +++L
Sbjct: 302 TTASAAVDSLADGIDFHSSINRLRYDLAASATLNRMADLVTEAVEKANMEPFDISEVILA 361
Query: 436 GGSTRIPKVQKLLQDFF 486
GG++ PK+ L++ F
Sbjct: 362 GGASNTPKLTSLMESIF 378
>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1238
Score = 28.7 bits (61), Expect = 1.0
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = -1
Query: 126 SKSSPPKWVSPAVDFTSKIPSSMVRMDTSKVPPPRSK 16
+KSSP K VSP V SK +S V + S +P +K
Sbjct: 203 NKSSPVKHVSPNVKNNSKKTASSVNSNHSSIPSSITK 239
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 28.3 bits (60), Expect = 1.4
Identities = 27/92 (29%), Positives = 39/92 (42%)
Frame = -2
Query: 500 SSFPLKKSCRSFCTLGIRVEPPTSTISWI*ALSILASRRDFSTGSMVDLNRSAFSSSKRA 321
SSF S S + PTS+ S I + S S FS+ + + S+FSS+ +
Sbjct: 315 SSFSSTLSSSSMSSSSSFSSSPTSSSSTISSSSSSPSSSSFSSTTSSSKSSSSFSSTVSS 374
Query: 320 RVIDV*KSIPSKRESISMLACVTMTRSSLPSH 225
++ S S S A + SSL SH
Sbjct: 375 SSSTSSSTLTSSSSSSSRPASSSSHSSSLSSH 406
>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 743
Score = 27.5 bits (58), Expect = 2.4
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +1
Query: 127 QSHGQPLCPGVQEEIQKGPRYQQESSY 207
QS G PL PG + GP + SSY
Sbjct: 599 QSIGDPLPPGAMANVSAGPSSVRSSSY 625
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2685
Score = 26.2 bits (55), Expect = 5.5
Identities = 16/57 (28%), Positives = 28/57 (49%)
Frame = -1
Query: 288 KERIYLNARLCDDDKVLFALSHAVRKRIRALLLVARSFLYFLLNSWTKWLTMRLSKS 118
+ R+ A+ +++K HAV L V + ++ FL SW KWL + + +S
Sbjct: 106 RSRLVFKAKR-EEEKTEEKFCHAVYMS-NLLRNVEQKWIQFLHKSWMKWLHISIQES 160
>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 932
Score = 26.2 bits (55), Expect = 5.5
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -3
Query: 421 RGFEPYPSWHHGETSPLAP 365
+ +P P+ HG+TSPL+P
Sbjct: 420 KAIKPMPTSIHGQTSPLSP 438
>SPCC320.09 |hem15||ferrochelatase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 384
Score = 26.2 bits (55), Expect = 5.5
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -1
Query: 162 LNSWTKWLTMRLSKSSPPKWVSPAVDF 82
LN K++ SK P W+SPA DF
Sbjct: 256 LNYKNKFVNAWQSKVGPLPWMSPATDF 282
>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1564
Score = 26.2 bits (55), Expect = 5.5
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = +2
Query: 152 QEFKRKYKKDLATNKRALMRLRTACERAKRTLSSSHKRALR*ILSL 289
QEF+R+Y ++ + + L L AC A S HK A R I+S+
Sbjct: 120 QEFQRRYYAEIISCWKVLAFLLQACTDAD---SKWHKMATRLIVSI 162
>SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 538
Score = 25.8 bits (54), Expect = 7.3
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +1
Query: 280 SLFEGIDFYTSITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQIHDIVLVG 438
SL G+D+YT I E +A +S+ E +K D + D++ D + VG
Sbjct: 331 SLARGLDYYTGIIYEAVTEASAPKIKSSAE--KKKSADPEADRSN-DDSIGVG 380
>SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 591
Score = 25.4 bits (53), Expect = 9.6
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Frame = +2
Query: 347 ICSGLPWSQ----WRSLSVMPRWIRLKSTILYWW 436
ICS LP + W + S PR+ R S ++ WW
Sbjct: 133 ICSALPAAGSIYLWAAESAGPRFGRFVSFLVAWW 166
>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 910
Score = 25.4 bits (53), Expect = 9.6
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 570 DKSEEVQDLLLLDVTPLFP 626
+ S E+ D+L D TPLFP
Sbjct: 167 ENSFELLDILTFDTTPLFP 185
>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 638
Score = 25.4 bits (53), Expect = 9.6
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +3
Query: 30 AVPSTCPSLPSRMVSSR*NPPPATPTW 110
++PST P++PS +S + PP T ++
Sbjct: 299 SIPSTIPTIPSAYSASVSSQPPLTHSY 325
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,538,579
Number of Sequences: 5004
Number of extensions: 75211
Number of successful extensions: 273
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 273
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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