Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30859
         (788 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...   101   9e-23
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    77   4e-15
SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces p...    52   9e-08
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe...    30   0.43 
SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces po...    29   0.76 
SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces po...    28   1.8  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    28   1.8  
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    27   2.3  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    27   3.1  
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    26   5.4  
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz...    26   5.4  
SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos...    25   9.4  
SPBC1271.12 |kes1||oxysterol binding protein |Schizosaccharomyce...    25   9.4  
SPBC16G5.07c |||prohibitin |Schizosaccharomyces pombe|chr 2|||Ma...    25   9.4  

>SPBC2F12.05c |||sterol binding ankyrin repeat
            protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score =  101 bits (243), Expect = 9e-23
 Identities = 45/78 (57%), Positives = 61/78 (78%)
 Frame = +3

Query: 261  IGKELSKIPIPVNFSEPLSMLQRLTEDYEYSSVLDQAAKFDDPAQQLAYVAAFTVSSYAT 440
            IGK+++K+ +PV+F+EP S+LQR+ ED EY+ +LDQA+   DP Q++ YVAAF  S YA+
Sbjct: 946  IGKDMTKMTLPVSFNEPTSLLQRVAEDMEYTELLDQASHNKDPYQRILYVAAFAASEYAS 1005

Query: 441  TACRTNKPFNPLLGETFE 494
            T  R  KPFNPLLGET+E
Sbjct: 1006 TLNRVAKPFNPLLGETYE 1023


>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 76.6 bits (180), Expect = 4e-15
 Identities = 41/84 (48%), Positives = 57/84 (67%), Gaps = 3/84 (3%)
 Frame = +3

Query: 261 IGKELSKIPIPVNFSEPLSMLQRLTEDYEYSSVLDQAAKFDDPAQQLAYVAAFTVSSYAT 440
           IGK++S IP PV  +EP ++LQR  ED EYS++LD+A + DD   ++ YVAAF VS+++ 
Sbjct: 581 IGKDISSIPAPVVSNEPCNLLQRCAEDLEYSNMLDKANECDDDI-KIFYVAAFAVSNFSN 639

Query: 441 TACR---TNKPFNPLLGETFECDR 503
              +     K F+PLLGETFE  R
Sbjct: 640 MRHKERSVRKVFSPLLGETFELVR 663



 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = +3

Query: 630 QVPGEVTPDPTARSRLPPSSSGNGKQVTTLKKVTNNV 740
           Q+PG+   +   R+ +  +++ N +   TL+KVT  +
Sbjct: 302 QLPGDAKENKETRTSVEITAAENAQAAVTLRKVTRQL 338


>SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 489

 Score = 52.0 bits (119), Expect = 9e-08
 Identities = 27/74 (36%), Positives = 37/74 (50%)
 Frame = +3

Query: 270 ELSKIPIPVNFSEPLSMLQRLTEDYEYSSVLDQAAKFDDPAQQLAYVAAFTVSSYATTAC 449
           +LSK+  P    EP SML+R+T    +  +L    K  DP  +   V  F +S +     
Sbjct: 43  DLSKVTFPTFVLEPKSMLERITNFMSHPDLLLNVQKTADPEMRFLDVVRFYMSGWHIRPR 102

Query: 450 RTNKPFNPLLGETF 491
              KP NP+LGETF
Sbjct: 103 GVKKPLNPILGETF 116


>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 317

 Score = 29.9 bits (64), Expect = 0.43
 Identities = 20/54 (37%), Positives = 27/54 (50%)
 Frame = -1

Query: 170 ACDTCGQTTMSVSLAGSDGVVLPSAPPIALSARSLSSTNITCCVSVTVSPSDSS 9
           AC TC  +T S+S +G+  +   S  P  +  R+ SS  IT   S   S S SS
Sbjct: 110 ACSTCTISTSSLSYSGT--ISSTSIAPSMIGTRTSSSYFITSSSSTPSSSSSSS 161


>SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 29.1 bits (62), Expect = 0.76
 Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 5/92 (5%)
 Frame = +3

Query: 252 ENCIG-KELSKI--PIPVNFSEPLSMLQ--RLTEDYEYSSVLDQAAKFDDPAQQLAYVAA 416
           + CIG K+++ +   +P    EP+  L+     +  +Y +V+  +   D+  + L  +  
Sbjct: 48  KQCIGVKDIASLRFSLPAQLLEPVGNLEYWNYVDRPDYFAVMGDSD--DELERMLGVLRW 105

Query: 417 FTVSSYATTACRTNKPFNPLLGETFECDRMAT 512
           +          R  KP+N +LGE F C  + T
Sbjct: 106 WFTKDLRFVRGRVVKPYNSVLGEFFRCKWVVT 137


>SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 399

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 18/81 (22%), Positives = 35/81 (43%), Gaps = 7/81 (8%)
 Frame = +3

Query: 270 ELSKIPIPVNFSEPLSMLQRLTEDYEYSSVLDQAAKFDDPAQQLAYVAAFTVSSYATTAC 449
           +LS +  P       S+L+ ++  +E+  +      F  P +++  V  + ++  +    
Sbjct: 39  DLSTLSAPSFILSGTSLLEYMSYWFEFPELFVTIVDFPTPKERMLAVLKWYITGLSREYA 98

Query: 450 RTNK-------PFNPLLGETF 491
             NK       P NP+LGE F
Sbjct: 99  SRNKNYGTEKKPLNPILGELF 119


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +3

Query: 312 LSMLQRLTEDYEYSSVLDQAAKFDDPAQQLAYVAA 416
           + MLQ  T D ++  +    A FDDP+ Q+  +AA
Sbjct: 260 IEMLQSCTPDEKWCFIRSNFAGFDDPSFQIPELAA 294


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1154

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 2/90 (2%)
 Frame = +1

Query: 403 PTSPHSQSPRTRPPRAGQTNRSILCSARRSNATAWRP--RLASHLPKQVFASPADGGAVS 576
           P S   +  R RP  + Q +RSI  ++R    TA  P    + H+  Q   +P    A +
Sbjct: 349 PPSAPVREKRNRPAHSAQISRSISKTSRMYRQTAEEPLNSYSLHVYPQKITAPTSPYAAT 408

Query: 577 ARGTFGAGNAGRSSPLTTKFRGKLLQILPL 666
                      +  P T  F  K L++L L
Sbjct: 409 QEELLAFTTIRQHLPDTLAFH-KFLELLHL 437


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1471

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 19/54 (35%), Positives = 28/54 (51%)
 Frame = +3

Query: 255  NCIGKELSKIPIPVNFSEPLSMLQRLTEDYEYSSVLDQAAKFDDPAQQLAYVAA 416
            N + K    I  P +FSEP+SM    + D +   +L   +K    +QQL Y+AA
Sbjct: 941  NSLSKWKCLIKKPSDFSEPVSM-DFTSNDEQLVQLLQAESKLRQASQQL-YMAA 992


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = +3

Query: 609 QEFTIDHQVPGEVTPDPT-ARSRLPPSSSGNGKQVTTLKKV-TNNVPQFS 752
           + F+I     G   P P+ + S+ PPS +   +    L  + +NNVP F+
Sbjct: 161 RRFSISESA-GAAAPTPSPSNSKSPPSENRKNRLQNVLSPIASNNVPDFN 209


>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +1

Query: 382 MTPRSNSPTSPHSQSPRTRPPRAGQTNRSILCSA 483
           M+P S SP  P  QSP+      G  + SI  +A
Sbjct: 318 MSPISISPAKPSPQSPKLSQSAVGHPSSSIPAAA 351


>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 790

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 28/110 (25%), Positives = 41/110 (37%), Gaps = 9/110 (8%)
 Frame = +3

Query: 354 SVLDQAAKFDDPAQQLAYVAAFTVS---SYATTACRT--NKPFNPLLGETFE--CDRMAT 512
           S+L++AA     A +LA      V    +Y   A RT   K    L     +  C R A 
Sbjct: 610 SILEKAADKVKTADRLAIYNVLLVKVALNYGVLATRTVYEKAIESLSDSEVKDMCLRFAE 669

Query: 513 SAGEPSSETGVRITRRWWRSFCEGHVRG--WQCWQEFTIDHQVPGEVTPD 656
              +       R+       +C+  V    W+ WQEF I +  P E   +
Sbjct: 670 METKLGEIDRARLIYIHGSQYCDPRVETDYWKAWQEFEIRYGNPEETVKE 719


>SPBC1271.12 |kes1||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 388

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 459 KPFNPLLGETFECDRMATSAGEPSSETGVRIT 554
           KP NP+LGE F   +  T  GE +  T  +++
Sbjct: 110 KPLNPILGELF-TGKWNTDIGEDTELTSEQVS 140


>SPBC16G5.07c |||prohibitin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 354

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +2

Query: 692 GQRETSYNFEEGDQQRSTIFIVGQLLGSVN 781
           G+R+ + N  EGD+Q   +   GQ + ++N
Sbjct: 224 GKRQAAINVAEGDKQAEILDSEGQKIKTIN 253


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,901,572
Number of Sequences: 5004
Number of extensions: 54180
Number of successful extensions: 203
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)