Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30859
(788 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37277| Best HMM Match : Oxysterol_BP (HMM E-Value=0) 121 8e-28
SB_8312| Best HMM Match : No HMM Matches (HMM E-Value=.) 82 6e-16
SB_31535| Best HMM Match : Oxysterol_BP (HMM E-Value=1.6e-08) 81 8e-16
SB_22051| Best HMM Match : No HMM Matches (HMM E-Value=.) 56 4e-08
SB_28421| Best HMM Match : Oxysterol_BP (HMM E-Value=4.5e-11) 52 5e-07
SB_21712| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.80
SB_50973| Best HMM Match : Oxysterol_BP (HMM E-Value=5.2e-09) 31 1.1
SB_33562| Best HMM Match : ATP-synt_8 (HMM E-Value=0.37) 30 2.5
SB_6388| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.5
SB_12542| Best HMM Match : Collagen (HMM E-Value=1.3) 30 2.5
SB_46753| Best HMM Match : Fimbrial_CS1 (HMM E-Value=1.1) 29 3.2
SB_38852| Best HMM Match : Prion_octapep (HMM E-Value=0.85) 29 3.2
SB_45154| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45) 29 4.3
SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_54250| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_42179| Best HMM Match : rve (HMM E-Value=9.8e-05) 29 5.7
SB_38937| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.7
SB_15424| Best HMM Match : PAN (HMM E-Value=0.00016) 29 5.7
SB_11571| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.7
SB_51020| Best HMM Match : BDV_P10 (HMM E-Value=1.9) 29 5.7
SB_26077| Best HMM Match : UQ_con (HMM E-Value=6e-18) 28 7.5
SB_13655| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_43972| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.9
SB_38809| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.9
SB_35497| Best HMM Match : PT (HMM E-Value=0.64) 28 9.9
SB_21518| Best HMM Match : zf-C2H2 (HMM E-Value=0) 28 9.9
>SB_37277| Best HMM Match : Oxysterol_BP (HMM E-Value=0)
Length = 926
Score = 121 bits (291), Expect = 8e-28
Identities = 72/161 (44%), Positives = 93/161 (57%), Gaps = 1/161 (0%)
Frame = +3
Query: 294 VNFSEPLSMLQRLTEDYEYSSVLDQAAKFDDPAQQLAYVAAFTVSSYATTACRTNKPFNP 473
VNF+EPLSMLQR+TE+ EYS VLD+AA +Q+ YVAAFTVSSY+TT+ RTNKPFNP
Sbjct: 555 VNFNEPLSMLQRITEELEYSEVLDKAAACTSSLEQMCYVAAFTVSSYSTTSNRTNKPFNP 614
Query: 474 LLGETFECDRMATSAGEPSSETGVRITRRWWRSFCEGHVRGWQCWQEFTIDHQVPGE-VT 650
LLGETFECDR +E +++ S + W WQEF+ + G+ +
Sbjct: 615 LLGETFECDRSEDYGWRSLAE---QVSHHPPASAFHAEHKDWIFWQEFSATSKFRGKYLQ 671
Query: 651 PDPTARSRLPPSSSGNGKQVTTLKKVTNNVPQFSLWGNCWV 773
P + L SGN T +KVT V + G W+
Sbjct: 672 IIPQGIAHLKFIKSGNH---YTWRKVTTTVHNI-IVGKLWI 708
>SB_8312| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 96
Score = 81.8 bits (193), Expect = 6e-16
Identities = 38/69 (55%), Positives = 50/69 (72%)
Frame = +3
Query: 300 FSEPLSMLQRLTEDYEYSSVLDQAAKFDDPAQQLAYVAAFTVSSYATTACRTNKPFNPLL 479
F+EPL+ LQR+TE EYS +L AA DDP ++L YVAAF +S+ ++ R KPFNPLL
Sbjct: 3 FNEPLTFLQRITEYMEYSELLHTAASQDDPTRRLQYVAAFAISATSSNLDRVGKPFNPLL 62
Query: 480 GETFECDRM 506
GET+E R+
Sbjct: 63 GETYELVRV 71
>SB_31535| Best HMM Match : Oxysterol_BP (HMM E-Value=1.6e-08)
Length = 836
Score = 81.4 bits (192), Expect = 8e-16
Identities = 38/68 (55%), Positives = 49/68 (72%)
Frame = +3
Query: 300 FSEPLSMLQRLTEDYEYSSVLDQAAKFDDPAQQLAYVAAFTVSSYATTACRTNKPFNPLL 479
F+EPL+ LQR+TE EYS +L AA DDP ++L YVAAF +S+ ++ R KPFNPLL
Sbjct: 3 FNEPLTFLQRITEYMEYSELLHTAASQDDPTRRLQYVAAFAISATSSNLDRVGKPFNPLL 62
Query: 480 GETFECDR 503
GET+E R
Sbjct: 63 GETYELVR 70
>SB_22051| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 821
Score = 55.6 bits (128), Expect = 4e-08
Identities = 24/78 (30%), Positives = 45/78 (57%)
Frame = +3
Query: 264 GKELSKIPIPVNFSEPLSMLQRLTEDYEYSSVLDQAAKFDDPAQQLAYVAAFTVSSYATT 443
G +LS++ +P EP S L +L++ Y ++ +L +AA ++P ++ V + +S +
Sbjct: 313 GMDLSRVTLPTFILEPRSFLDKLSDFYYHTDILSRAACEENPYSRMKEVIRWYLSGFYKK 372
Query: 444 ACRTNKPFNPLLGETFEC 497
KP+NP++GE F C
Sbjct: 373 PKGLKKPYNPIIGEMFRC 390
>SB_28421| Best HMM Match : Oxysterol_BP (HMM E-Value=4.5e-11)
Length = 378
Score = 52.0 bits (119), Expect = 5e-07
Identities = 19/39 (48%), Positives = 34/39 (87%)
Frame = +3
Query: 261 IGKELSKIPIPVNFSEPLSMLQRLTEDYEYSSVLDQAAK 377
+GK+++K+ +PV+F+EP+S LQRL+ED EY+ +L++A +
Sbjct: 64 VGKDMTKVTMPVHFNEPVSFLQRLSEDLEYADILNRACE 102
>SB_21712| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 135
Score = 31.5 bits (68), Expect = 0.80
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +3
Query: 561 WWRSFCEGHVRGWQCWQEFT 620
WW SF + WQCW+ T
Sbjct: 43 WWESFIQNERPKWQCWEAMT 62
>SB_50973| Best HMM Match : Oxysterol_BP (HMM E-Value=5.2e-09)
Length = 529
Score = 31.1 bits (67), Expect = 1.1
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +3
Query: 405 YVAAFTVSSYATTACRTNKPFNPLLGETFEC 497
Y+ +F V + A KP+NP+LGETF C
Sbjct: 233 YLTSFHVGRKGSLA---KKPYNPILGETFTC 260
>SB_33562| Best HMM Match : ATP-synt_8 (HMM E-Value=0.37)
Length = 292
Score = 29.9 bits (64), Expect = 2.5
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = -2
Query: 532 EDGSPAEVAMRSHSNVSPSRGLNGLFVRHAVVAY 431
+DG+PA++++R+ SNV R L G+ + V Y
Sbjct: 142 QDGTPAKISVRAQSNVRVGRPLAGVVDLNPVPTY 175
>SB_6388| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1520
Score = 29.9 bits (64), Expect = 2.5
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +1
Query: 385 TPRSNSPTSPHSQSPRTRPPR 447
TP SP+ HS+SPR RP R
Sbjct: 1145 TPSRGSPSRHHSRSPRARPSR 1165
>SB_12542| Best HMM Match : Collagen (HMM E-Value=1.3)
Length = 532
Score = 29.9 bits (64), Expect = 2.5
Identities = 21/69 (30%), Positives = 31/69 (44%)
Frame = -2
Query: 667 RAVGSGVTSPGTWWSMVNSCQHCQPRTCPSQKLRHHRRVMRTPVSEDGSPAEVAMRSHSN 488
R G G ++ + ++ + C CPS ++R R T V G P E S
Sbjct: 261 RCTGCGYSTQSST-VVIRTAASCGGTACPSVRVRTQR--CNTGVL--GIPGEDGATSSVG 315
Query: 487 VSPSRGLNG 461
V P+RG+NG
Sbjct: 316 VGPARGVNG 324
>SB_46753| Best HMM Match : Fimbrial_CS1 (HMM E-Value=1.1)
Length = 982
Score = 29.5 bits (63), Expect = 3.2
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +1
Query: 1 ESSDESEGETVTETQQVIFVEDKERAESAMGGADGSTTPSLPAKD 135
+ SDES GE + + + ED +++ + + +T S+P KD
Sbjct: 717 QDSDESSGEDLEDDESSSSDEDDDKSTPELAEENEQSTRSIPCKD 761
>SB_38852| Best HMM Match : Prion_octapep (HMM E-Value=0.85)
Length = 706
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 7/39 (17%)
Frame = -1
Query: 743 WNVVGHL---LQSC----NLFPVARGTWRKAAPSGRIWS 648
W V G + +Q+C L ++R TWR+A P G WS
Sbjct: 350 WGVAGPIKVNVQTCIPHGGLLVLSRSTWRRAYPMGGCWS 388
>SB_45154| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45)
Length = 486
Score = 29.1 bits (62), Expect = 4.3
Identities = 13/56 (23%), Positives = 21/56 (37%)
Frame = -1
Query: 554 GDANTCFGRWLASRGRHAVAFERLAEQRIERFVCPARGGRVRGDCECGDVGELLRG 387
GD +TC + G H +++ + F C + G C D+ E G
Sbjct: 397 GDGHTCQDINECADGSHTCSYKATCTNTVGSFTCACKAGHTGDGHTCQDINECADG 452
>SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1870
Score = 29.1 bits (62), Expect = 4.3
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +1
Query: 385 TPRSNSPTSPHSQSPRTRPP 444
TPR PT P +PR RPP
Sbjct: 1357 TPRPRPPTPPRPPTPRPRPP 1376
>SB_54250| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 118
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 163 SQAAGCVDGRPRRTRVPDKPNYPLSLWS 246
S A VDGRP+R + PN P+ +W+
Sbjct: 53 SSARVSVDGRPKRIKKYTDPNEPVLVWT 80
>SB_42179| Best HMM Match : rve (HMM E-Value=9.8e-05)
Length = 211
Score = 28.7 bits (61), Expect = 5.7
Identities = 11/27 (40%), Positives = 20/27 (74%), Gaps = 3/27 (11%)
Frame = -1
Query: 509 RHAVAFERLAEQRIERFVCP---ARGG 438
RH +A +R++++ ++ F+CP ARGG
Sbjct: 32 RHVMAAKRMSDEELDAFLCPIYYARGG 58
>SB_38937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2085
Score = 28.7 bits (61), Expect = 5.7
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = +1
Query: 463 RSILCSARRSNATAWRPRLASHLPKQVFASPADGGAVSARGTFGAGNAGRSSP 621
R +LC R NA R + LP+ ASPA A++ + + GR SP
Sbjct: 504 RRLLCIRRTKNAATTRMSSHAFLPRNFIASPA---ALNTKFAMLPTSPGRRSP 553
>SB_15424| Best HMM Match : PAN (HMM E-Value=0.00016)
Length = 702
Score = 28.7 bits (61), Expect = 5.7
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 385 TPRSNSPTS-PHSQSPRTRPPRAGQTNRSILCSARRSNATAWRP 513
TP +P S PHSQSP R P++ ++S A +S + P
Sbjct: 433 TPTFRAPQSEPHSQSPTVRAPQSEPHSQSSTVRAPQSEPHSQSP 476
>SB_11571| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 469
Score = 28.7 bits (61), Expect = 5.7
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Frame = +1
Query: 385 TPRSNSPTSPHSQSPRTRPPRAGQTN--RSILCSARRSNAT---AWRPR 516
TPR +P S S +PR P + Q+N R + R+SN T A+ PR
Sbjct: 76 TPRPLTPPSRQSNNPRPHTPPSCQSNTPRPLTPPPRQSNTTQPPAYPPR 124
>SB_51020| Best HMM Match : BDV_P10 (HMM E-Value=1.9)
Length = 576
Score = 28.7 bits (61), Expect = 5.7
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = -2
Query: 583 PSQKLRHHRRVMRTPVSEDGSPAEVAMRS 497
P QK R R + +TP+ +G+PA + +R+
Sbjct: 286 PCQKNRPRRLLPKTPLESEGAPAMIPLRA 314
>SB_26077| Best HMM Match : UQ_con (HMM E-Value=6e-18)
Length = 215
Score = 28.3 bits (60), Expect = 7.5
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +3
Query: 297 NFSEPLSMLQRLTEDYEYSS 356
N +PLS L LT+DYEY S
Sbjct: 118 NLEDPLSPLFDLTDDYEYGS 137
>SB_13655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 28.3 bits (60), Expect = 7.5
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +1
Query: 403 PTSPHSQSPRTRPPRAGQTNRSI 471
PTSP S SPR+ P R RS+
Sbjct: 47 PTSPSSASPRSSPTRKAGLRRSV 69
>SB_43972| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 899
Score = 27.9 bits (59), Expect = 9.9
Identities = 20/74 (27%), Positives = 29/74 (39%)
Frame = +1
Query: 397 NSPTSPHSQSPRTRPPRAGQTNRSILCSARRSNATAWRPRLASHLPKQVFASPADGGAVS 576
+ P S + SP T PP+A + SAR+SN + S K +P G
Sbjct: 375 SKPRSMTTPSPSTSPPKANRQPLKKKLSARKSNERGGVEKTRSKSEK---VAPPKGHEAK 431
Query: 577 ARGTFGAGNAGRSS 618
R AG+ +
Sbjct: 432 VRTVKSESEAGKKN 445
>SB_38809| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 188
Score = 27.9 bits (59), Expect = 9.9
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +1
Query: 109 TTPSLPAK-DTDIVVWPHVSQAAGCVDGRPRRTR 207
TTP +P K DT+ V VSQA C D P +++
Sbjct: 130 TTPMVPGKVDTEAVDTKTVSQAVHCQDVLPTKSQ 163
>SB_35497| Best HMM Match : PT (HMM E-Value=0.64)
Length = 187
Score = 27.9 bits (59), Expect = 9.9
Identities = 19/69 (27%), Positives = 33/69 (47%)
Frame = -1
Query: 209 TRVRRGRPSTQPAACDTCGQTTMSVSLAGSDGVVLPSAPPIALSARSLSSTNITCCVSVT 30
TR +P++QPA+ + SVS + S V + ++ S S +++ VS +
Sbjct: 17 TRQPASQPASQPASQPASQSVSQSVSQSVSQSVSQSVSQSVSQSVSQSVSQSVSQSVSQS 76
Query: 29 VSPSDSSEL 3
VS S S +
Sbjct: 77 VSQSVSQSV 85
>SB_21518| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 376
Score = 27.9 bits (59), Expect = 9.9
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -1
Query: 203 VRRGRPSTQPAACDTCGQT 147
VRR S++P +C TCG+T
Sbjct: 227 VRRSHASSRPYSCPTCGKT 245
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,316,739
Number of Sequences: 59808
Number of extensions: 479195
Number of successful extensions: 2455
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 2189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2442
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2167838629
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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