Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30859
         (788 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    26   0.35 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    26   0.35 
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    25   1.1  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    24   1.4  
AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.            21   9.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.9  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 26.2 bits (55), Expect = 0.35
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -1

Query: 104  PSAPPIALSARSLSSTNI 51
            P+ PPI L AR+LSS+ I
Sbjct: 1006 PAGPPINLEARALSSSEI 1023


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 26.2 bits (55), Expect = 0.35
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -1

Query: 104  PSAPPIALSARSLSSTNI 51
            P+ PPI L AR+LSS+ I
Sbjct: 1002 PAGPPINLEARALSSSEI 1019


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
 Frame = -2

Query: 628 WSMVNSCQHCQP---RTCPSQKLRHHRRVMRTPVSEDGSPAEVAMR 500
           W M  SC  C P   +T PS+K    RR  RTP     S  + A R
Sbjct: 385 WQM--SCVACSPPPRQTPPSRKESGRRRRRRTPRYNSVSKIDRASR 428


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -1

Query: 119 DGVVLPSAPPIALSARSLSSTNITCC 42
           +GV++P  PPI    ++ +S    CC
Sbjct: 423 NGVIIPDDPPIGCECKTCNS-KTKCC 447


>AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.
          Length = 122

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -2

Query: 730 VTFFKVVTCFPLPE 689
           +TFF + T FP PE
Sbjct: 40  ITFFCMATGFPRPE 53


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = -1

Query: 185 STQPAACDTCGQTT-MSVSLAGSDGVVLPSAPPIALSARSLSSTNIT 48
           ++ PA   T G TT +  + A   G   PSA     +A +  +T  T
Sbjct: 213 ASTPATVTTTGATTTLPAASATGTGPATPSAVVATSNATAAMTTGTT 259


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,659
Number of Sequences: 438
Number of extensions: 3778
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)