Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30859
(788 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g31030.1 68415.m03783 oxysterol-binding family protein simila... 88 7e-18
At2g31020.1 68415.m03782 oxysterol-binding family protein simila... 88 7e-18
At4g08180.3 68417.m01353 oxysterol-binding family protein simila... 87 1e-17
At4g08180.2 68417.m01352 oxysterol-binding family protein simila... 87 1e-17
At4g08180.1 68417.m01351 oxysterol-binding family protein simila... 87 1e-17
At4g12460.1 68417.m01971 oxysterol-binding family protein simila... 87 2e-17
At1g13170.1 68414.m01527 oxysterol-binding family protein simila... 85 7e-17
At4g22540.2 68417.m03252 oxysterol-binding family protein simila... 83 3e-16
At4g22540.1 68417.m03253 oxysterol-binding family protein simila... 83 3e-16
At5g59420.1 68418.m07446 oxysterol-binding family protein simila... 73 2e-13
At5g02100.1 68418.m00131 oxysterol-binding family protein simila... 71 7e-13
At3g09300.1 68416.m01104 oxysterol-binding family protein simila... 71 9e-13
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 33 0.22
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 33 0.22
At4g25860.1 68417.m03719 oxysterol-binding family protein contai... 31 0.66
At2g44290.1 68415.m05511 protease inhibitor/seed storage/lipid t... 31 1.2
At5g11550.1 68418.m01347 expressed protein 30 1.5
At2g24790.1 68415.m02964 zinc finger (B-box type) family protein 29 3.5
At4g18450.1 68417.m02737 ethylene-responsive factor, putative si... 29 4.6
At5g57240.1 68418.m07151 oxysterol-binding family protein low si... 28 6.1
At3g23270.1 68416.m02933 regulator of chromosome condensation (R... 28 6.1
At3g16290.1 68416.m02056 FtsH protease, putative contains simila... 28 6.1
At1g77620.1 68414.m09037 expressed protein 28 6.1
At1g27750.1 68414.m03391 ubiquitin system component Cue domain-c... 28 6.1
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 28 8.1
At4g01750.1 68417.m00227 expressed protein T15B16.8 28 8.1
At2g11570.1 68415.m01245 hypothetical protein 28 8.1
>At2g31030.1 68415.m03783 oxysterol-binding family protein similar
to SWH1 [Saccharomyces cerevisiae] GI:402658; contains
Pfam profile PF01237: Oxysterol-binding protein
Length = 489
Score = 87.8 bits (208), Expect = 7e-18
Identities = 45/83 (54%), Positives = 59/83 (71%), Gaps = 3/83 (3%)
Frame = +3
Query: 261 IGKELSKIPIPVNFSEPLSMLQRLTEDYEYSSVLDQAA---KFDDPAQQLAYVAAFTVSS 431
IGK+L+K+ +PV F+EPLS LQ+ ED EYS +LDQA+ K + ++ VAAF VS
Sbjct: 135 IGKDLTKVCLPVYFNEPLSSLQKCFEDLEYSYLLDQASEWGKRGNNLMRILNVAAFAVSG 194
Query: 432 YATTACRTNKPFNPLLGETFECD 500
YA+T R KPFNP+LGET+E D
Sbjct: 195 YASTKGRICKPFNPMLGETYEAD 217
>At2g31020.1 68415.m03782 oxysterol-binding family protein similar
to SP|Q969R2 Oxysterol-binding protein 2 {Homo sapiens};
contains Pfam profiles PF00169: PH domain, PF01237:
Oxysterol-binding protein
Length = 760
Score = 87.8 bits (208), Expect = 7e-18
Identities = 45/83 (54%), Positives = 59/83 (71%), Gaps = 3/83 (3%)
Frame = +3
Query: 261 IGKELSKIPIPVNFSEPLSMLQRLTEDYEYSSVLDQAA---KFDDPAQQLAYVAAFTVSS 431
IGK+L+K+ +PV F+EPLS LQ+ ED EYS +LDQA+ K + ++ VAAF VS
Sbjct: 402 IGKDLTKVCLPVYFNEPLSSLQKCFEDLEYSYLLDQASEWGKRGNNLMRILNVAAFAVSG 461
Query: 432 YATTACRTNKPFNPLLGETFECD 500
YA+T R KPFNP+LGET+E D
Sbjct: 462 YASTEGRICKPFNPMLGETYEAD 484
>At4g08180.3 68417.m01353 oxysterol-binding family protein similar
to SP|Q969R2 Oxysterol-binding protein 2 {Homo sapiens};
contains Pfam profiles PF00169: PH domain, PF01237:
Oxysterol-binding protein
Length = 813
Score = 87.0 bits (206), Expect = 1e-17
Identities = 45/83 (54%), Positives = 58/83 (69%), Gaps = 3/83 (3%)
Frame = +3
Query: 261 IGKELSKIPIPVNFSEPLSMLQRLTEDYEYSSVLDQA---AKFDDPAQQLAYVAAFTVSS 431
IGK+L+K+ +PV F+EPLS LQ+ ED EYS +LD+A K + ++ VAAF VS
Sbjct: 445 IGKDLTKVCLPVYFNEPLSSLQKCFEDLEYSYLLDRAFEYGKRGNSLMRILNVAAFAVSG 504
Query: 432 YATTACRTNKPFNPLLGETFECD 500
YA+T R KPFNPLLGET+E D
Sbjct: 505 YASTEGRICKPFNPLLGETYEAD 527
>At4g08180.2 68417.m01352 oxysterol-binding family protein similar
to SP|Q969R2 Oxysterol-binding protein 2 {Homo sapiens};
contains Pfam profiles PF00169: PH domain, PF01237:
Oxysterol-binding protein
Length = 813
Score = 87.0 bits (206), Expect = 1e-17
Identities = 45/83 (54%), Positives = 58/83 (69%), Gaps = 3/83 (3%)
Frame = +3
Query: 261 IGKELSKIPIPVNFSEPLSMLQRLTEDYEYSSVLDQA---AKFDDPAQQLAYVAAFTVSS 431
IGK+L+K+ +PV F+EPLS LQ+ ED EYS +LD+A K + ++ VAAF VS
Sbjct: 445 IGKDLTKVCLPVYFNEPLSSLQKCFEDLEYSYLLDRAFEYGKRGNSLMRILNVAAFAVSG 504
Query: 432 YATTACRTNKPFNPLLGETFECD 500
YA+T R KPFNPLLGET+E D
Sbjct: 505 YASTEGRICKPFNPLLGETYEAD 527
>At4g08180.1 68417.m01351 oxysterol-binding family protein similar
to SP|Q969R2 Oxysterol-binding protein 2 {Homo sapiens};
contains Pfam profiles PF00169: PH domain, PF01237:
Oxysterol-binding protein
Length = 814
Score = 87.0 bits (206), Expect = 1e-17
Identities = 45/83 (54%), Positives = 58/83 (69%), Gaps = 3/83 (3%)
Frame = +3
Query: 261 IGKELSKIPIPVNFSEPLSMLQRLTEDYEYSSVLDQA---AKFDDPAQQLAYVAAFTVSS 431
IGK+L+K+ +PV F+EPLS LQ+ ED EYS +LD+A K + ++ VAAF VS
Sbjct: 446 IGKDLTKVCLPVYFNEPLSSLQKCFEDLEYSYLLDRAFEYGKRGNSLMRILNVAAFAVSG 505
Query: 432 YATTACRTNKPFNPLLGETFECD 500
YA+T R KPFNPLLGET+E D
Sbjct: 506 YASTEGRICKPFNPLLGETYEAD 528
>At4g12460.1 68417.m01971 oxysterol-binding family protein similar
to SP|P22059 Oxysterol-binding protein 1 {Homo sapiens};
contains Pfam profiles PF00169: PH domain, PF01237:
Oxysterol-binding protein
Length = 694
Score = 86.6 bits (205), Expect = 2e-17
Identities = 51/119 (42%), Positives = 69/119 (57%), Gaps = 3/119 (2%)
Frame = +3
Query: 261 IGKELSKIPIPVNFSEPLSMLQRLTEDYEYSSVLDQAAKFDDPAQQL---AYVAAFTVSS 431
+GK+L+++ +PV F+EP+S LQ+ ED EYS +LDQA ++ + L VAAF VS
Sbjct: 333 VGKDLTRVCLPVYFNEPISSLQKCFEDLEYSYLLDQAYEYGKSGKSLLRALNVAAFAVSG 392
Query: 432 YATTACRTNKPFNPLLGETFECDRMATSAGEPSSETGVRITRRWWRSFCEGHVRGWQCW 608
YA+T R KPFNPLLGET+E D S + T CEG +GW+ W
Sbjct: 393 YASTEGRHCKPFNPLLGETYEADFPEKGIRFFSEKVSHHPT--VIACHCEG--KGWKFW 447
>At1g13170.1 68414.m01527 oxysterol-binding family protein similar
to SP|P16258 Oxysterol-binding protein 1 {Oryctolagus
cuniculus}; contains Pfam profiles PF00169: PH domain,
PF01237: Oxysterol-binding protein
Length = 816
Score = 84.6 bits (200), Expect = 7e-17
Identities = 43/83 (51%), Positives = 57/83 (68%), Gaps = 3/83 (3%)
Frame = +3
Query: 261 IGKELSKIPIPVNFSEPLSMLQRLTEDYEYSSVLDQAAKFDDPAQQL---AYVAAFTVSS 431
IGK+LS + +PV F+EPLS LQ+ ED EYS ++D+A ++ +L +AAF VS
Sbjct: 442 IGKDLSGVCLPVYFNEPLSSLQKCFEDLEYSYLIDRALEWGKQGNELMRILNIAAFAVSG 501
Query: 432 YATTACRTNKPFNPLLGETFECD 500
YA+T R KPFNPLLGET+E D
Sbjct: 502 YASTEGRQCKPFNPLLGETYEAD 524
>At4g22540.2 68417.m03252 oxysterol-binding family protein similar
to SP|P16258 Oxysterol-binding protein 1 {Oryctolagus
cuniculus}; contains Pfam profiles PF00169: PH domain,
PF01237: Oxysterol-binding protein
Length = 510
Score = 82.6 bits (195), Expect = 3e-16
Identities = 50/119 (42%), Positives = 68/119 (57%), Gaps = 3/119 (2%)
Frame = +3
Query: 261 IGKELSKIPIPVNFSEPLSMLQRLTEDYEYSSVLDQA---AKFDDPAQQLAYVAAFTVSS 431
+GK+L+++ +PV F+EP+S LQ+ ED EYS +LD+A K + + VAAF VS
Sbjct: 142 VGKDLTRVCLPVYFNEPISSLQKCFEDLEYSYLLDRAYEHGKSGNGLLRALNVAAFAVSG 201
Query: 432 YATTACRTNKPFNPLLGETFECDRMATSAGEPSSETGVRITRRWWRSFCEGHVRGWQCW 608
YA+T R KPFNPLLGET+E D S + T CEG +GW+ W
Sbjct: 202 YASTEGRHCKPFNPLLGETYEADFPEKGIRFFSEKVSHHPT--VIACHCEG--KGWKFW 256
>At4g22540.1 68417.m03253 oxysterol-binding family protein similar
to SP|P16258 Oxysterol-binding protein 1 {Oryctolagus
cuniculus}; contains Pfam profiles PF00169: PH domain,
PF01237: Oxysterol-binding protein
Length = 721
Score = 82.6 bits (195), Expect = 3e-16
Identities = 50/119 (42%), Positives = 68/119 (57%), Gaps = 3/119 (2%)
Frame = +3
Query: 261 IGKELSKIPIPVNFSEPLSMLQRLTEDYEYSSVLDQA---AKFDDPAQQLAYVAAFTVSS 431
+GK+L+++ +PV F+EP+S LQ+ ED EYS +LD+A K + + VAAF VS
Sbjct: 353 VGKDLTRVCLPVYFNEPISSLQKCFEDLEYSYLLDRAYEHGKSGNGLLRALNVAAFAVSG 412
Query: 432 YATTACRTNKPFNPLLGETFECDRMATSAGEPSSETGVRITRRWWRSFCEGHVRGWQCW 608
YA+T R KPFNPLLGET+E D S + T CEG +GW+ W
Sbjct: 413 YASTEGRHCKPFNPLLGETYEADFPEKGIRFFSEKVSHHPT--VIACHCEG--KGWKFW 467
>At5g59420.1 68418.m07446 oxysterol-binding family protein similar
to SP|P16258 Oxysterol-binding protein 1 {Oryctolagus
cuniculus}; contains Pfam profile PF01237:
Oxysterol-binding protein
Length = 457
Score = 72.9 bits (171), Expect = 2e-13
Identities = 36/79 (45%), Positives = 54/79 (68%), Gaps = 1/79 (1%)
Frame = +3
Query: 261 IGKEL-SKIPIPVNFSEPLSMLQRLTEDYEYSSVLDQAAKFDDPAQQLAYVAAFTVSSYA 437
IG ++ S + +PV EP++MLQ++ E EYS +LDQA + +DP +L Y +++ +S Y
Sbjct: 77 IGSDITSMVTLPVVIFEPMTMLQKMAEIMEYSHLLDQADECEDPYLRLVYASSWAISVYY 136
Query: 438 TTACRTNKPFNPLLGETFE 494
RT KPFNP+LGET+E
Sbjct: 137 AFQ-RTWKPFNPILGETYE 154
>At5g02100.1 68418.m00131 oxysterol-binding family protein similar
to SWH1 [Saccharomyces cerevisiae] GI:402658; contains
Pfam profile PF01237: Oxysterol-binding protein
Length = 453
Score = 71.3 bits (167), Expect = 7e-13
Identities = 35/79 (44%), Positives = 53/79 (67%), Gaps = 1/79 (1%)
Frame = +3
Query: 261 IGKEL-SKIPIPVNFSEPLSMLQRLTEDYEYSSVLDQAAKFDDPAQQLAYVAAFTVSSYA 437
IG ++ S + +PV EP++MLQ++ E EYS +LD A K +DP ++ Y +++ +S Y
Sbjct: 77 IGSDVTSMVTLPVIIFEPMTMLQKMAELMEYSYLLDMADKTEDPYMRMVYASSWAISVYY 136
Query: 438 TTACRTNKPFNPLLGETFE 494
RT KPFNP+LGET+E
Sbjct: 137 AYQ-RTWKPFNPILGETYE 154
>At3g09300.1 68416.m01104 oxysterol-binding family protein similar
to SP|P22059 Oxysterol-binding protein 1 {Homo sapiens};
contains Pfam profile PF01237: Oxysterol-binding protein
Length = 458
Score = 70.9 bits (166), Expect = 9e-13
Identities = 35/79 (44%), Positives = 53/79 (67%), Gaps = 1/79 (1%)
Frame = +3
Query: 261 IGKEL-SKIPIPVNFSEPLSMLQRLTEDYEYSSVLDQAAKFDDPAQQLAYVAAFTVSSYA 437
IG ++ S + +PV EP++MLQ++ E EYS +LD A K +DP ++ Y +++ +S Y
Sbjct: 82 IGSDVTSMVTLPVIIFEPMTMLQKMAELMEYSHLLDMADKTEDPYLRMVYASSWAISVYY 141
Query: 438 TTACRTNKPFNPLLGETFE 494
RT KPFNP+LGET+E
Sbjct: 142 AFQ-RTWKPFNPILGETYE 159
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 33.1 bits (72), Expect = 0.22
Identities = 23/69 (33%), Positives = 31/69 (44%)
Frame = +1
Query: 382 MTPRSNSPTSPHSQSPRTRPPRAGQTNRSILCSARRSNATAWRPRLASHLPKQVFASPAD 561
++PR SP SPH + P + R G T RR A+ R R S P + + SP
Sbjct: 232 LSPRRRSPDSPHRRRPGSPIRRRGDT------PPRRRPASPSRGRSPSSPPPRRYRSPPR 285
Query: 562 GGAVSARGT 588
G RG+
Sbjct: 286 GSPRRIRGS 294
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 33.1 bits (72), Expect = 0.22
Identities = 23/69 (33%), Positives = 31/69 (44%)
Frame = +1
Query: 382 MTPRSNSPTSPHSQSPRTRPPRAGQTNRSILCSARRSNATAWRPRLASHLPKQVFASPAD 561
++PR SP SPH + P + R G T RR A+ R R S P + + SP
Sbjct: 239 LSPRRRSPDSPHRRRPGSPIRRRGDT------PPRRRPASPSRGRSPSSPPPRRYRSPPR 292
Query: 562 GGAVSARGT 588
G RG+
Sbjct: 293 GSPRRIRGS 301
>At4g25860.1 68417.m03719 oxysterol-binding family protein contains
Pfam profile PF01237: Oxysterol-binding protein
Length = 386
Score = 31.5 bits (68), Expect = 0.66
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Frame = +3
Query: 264 GKELSKIPIPVNFSEPLSMLQRLTED-YEYSS--VLDQAAKFDDPAQQLAYVAAFTVSSY 434
G +L+ +P P S LQ E Y + +L + ++ + P ++L V + +S+
Sbjct: 46 GSDLTNFQLPPQLILPRSRLQCYGEMIYSFGGQDLLGECSRRNIPIERLKSVVTWNISTL 105
Query: 435 ATTACRTNKPFNPLLGET 488
+ P+NP+LGET
Sbjct: 106 RPVVVGMS-PYNPILGET 122
>At2g44290.1 68415.m05511 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein (YLS3) similar to
lipid transfer protein Picea abies GI:2627141; contains
Pfam profile: PF00234: Protease inhibitor/seed
storage/LTP family; identical to cDNA YLS3 mRNA for
non-specific lipid transfer protein (nLTP) like protein,
partial cds GI:13122283
Length = 205
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +3
Query: 618 TIDHQVPGEVTPDPTARSRLPPSSSGNGKQVTTLKKVTNNVPQFS 752
T+ P +PT+ S P SS+GN TT TN+ FS
Sbjct: 139 TVSASAPTGSASEPTSMSSTPGSSAGNNSGRTTSVPGTNHAQSFS 183
>At5g11550.1 68418.m01347 expressed protein
Length = 314
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +1
Query: 400 SPTSPHSQSPRTRPPRAGQTNRSILCSARRSNATAWR 510
SPTSPH Q PR + ++ S S +S T WR
Sbjct: 32 SPTSPHQQQPRRKATTTSSSSSSSSTSTSQS-FTQWR 67
>At2g24790.1 68415.m02964 zinc finger (B-box type) family protein
Length = 294
Score = 29.1 bits (62), Expect = 3.5
Identities = 18/65 (27%), Positives = 25/65 (38%)
Frame = +1
Query: 400 SPTSPHSQSPRTRPPRAGQTNRSILCSARRSNATAWRPRLASHLPKQVFASPADGGAVSA 579
SP ++ R R R + + A R RPR+ K+ + DGG V
Sbjct: 225 SPAEREARVLRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRTDSRENDGGDVGV 284
Query: 580 RGTFG 594
G FG
Sbjct: 285 YGGFG 289
>At4g18450.1 68417.m02737 ethylene-responsive factor, putative
similar to ethylene response factor 1 GB:AAD03544
GI:4128208 from [Arabidopsis thaliana]; EREBP-1
(Ethylene-inducible DNA binding protein that interact
with an ethylene-responsive element) - Nicotiana
tabacum, PATCHX:D1007899
Length = 303
Score = 28.7 bits (61), Expect = 4.6
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Frame = +3
Query: 288 IPVNFSEPLSMLQRLTEDYEYSSVLDQAAKFDDPAQQ--LAYVAAFTVSSYATTACRTNK 461
IP E L L TED E++ +LD A F + L + S + +C+T K
Sbjct: 50 IPEGSREMLQSLDMSTEDQEWTEILDAIASFPNKTNHDPLTNPTIDSCSLSSRVSCKTRK 109
>At5g57240.1 68418.m07151 oxysterol-binding family protein low
similarity to SP|P22059 Oxysterol-binding protein 1
{Homo sapiens}; contains Pfam profile PF01237:
Oxysterol-binding protein
Length = 379
Score = 28.3 bits (60), Expect = 6.1
Identities = 16/78 (20%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Frame = +3
Query: 264 GKELSKIPIPVNFSEPLSMLQ---RLTEDYEYSSVLDQAAKFDDPAQQLAYVAAFTVSSY 434
G +L+ +P + S LQ + ++ +L + ++ D P +++ + + +S+
Sbjct: 40 GSDLTNFQLPPQMNLARSQLQCYGEIVYSFDGHDLLGECSRRDKPIERMKAMVTWYISTL 99
Query: 435 ATTACRTNKPFNPLLGET 488
P+NP++GET
Sbjct: 100 RPLIFGL-APYNPVIGET 116
>At3g23270.1 68416.m02933 regulator of chromosome condensation
(RCC1) family protein contains Pfam domain PF00415:
Regulator of chromosome condensation (RCC1); similar to
zinc finger protein (GI:15811367) [Arabidopsis
thaliana]; similar to chromosome condensation regulator
protein (GI:22770461) [Cicer arietinum]
Length = 1045
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Frame = +1
Query: 388 PRSNSPTSP-HSQSPRTR---PPRAGQTNRSILCSARRSN 495
P S SP P S SP R PPR +RS++ S R++N
Sbjct: 767 PSSPSPPPPPRSSSPYARRPSPPRTSGFSRSVIDSLRKTN 806
>At3g16290.1 68416.m02056 FtsH protease, putative contains
similarity to cell division protein FtsH GI:1652085 from
[Synechocystis sp. PCC 6803]
Length = 876
Score = 28.3 bits (60), Expect = 6.1
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +3
Query: 579 EGHVRGWQCWQEFTIDHQVPGEVTPDPTARSRLP 680
EG+ R W+ W E ID Q TP P R +P
Sbjct: 166 EGNKRFWEQWDELGIDVQCVNAYTP-PVKRPPVP 198
>At1g77620.1 68414.m09037 expressed protein
Length = 1151
Score = 28.3 bits (60), Expect = 6.1
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +1
Query: 16 SEGETVTETQQVIFVEDKERAESAMGGADGS 108
S+ E + E V+ +ED+E +G DG+
Sbjct: 237 SQSEGIAEASSVVLIEDQEEKRGCLGFLDGA 267
>At1g27750.1 68414.m03391 ubiquitin system component Cue
domain-containing protein very low similarity to ASC-1
complex subunit P100 [Homo sapiens] GI:12061187;
contains Pfam profile PF02845: CUE domain
Length = 1973
Score = 28.3 bits (60), Expect = 6.1
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +1
Query: 385 TPRSNSPTSPHSQSPRTRPPRAGQTNRSILCSARRSNATA 504
TP S P SP Q P PP + RS++ + + AT+
Sbjct: 769 TPTSQIPPSPFVQQPIYPPPNSSWDTRSLISPSGDAVATS 808
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 27.9 bits (59), Expect = 8.1
Identities = 22/88 (25%), Positives = 31/88 (35%)
Frame = +1
Query: 382 MTPRSNSPTSPHSQSPRTRPPRAGQTNRSILCSARRSNATAWRPRLASHLPKQVFASPAD 561
++ + NS P S SP R R S+ A P S PK+
Sbjct: 527 VSKQRNSRDKPSSSSPPARSTGGKTPVRKSSSSSFSKPRKASSPPEKSSKPKRKILKTVG 586
Query: 562 GGAVSARGTFGAGNAGRSSPLTTKFRGK 645
+++ARG G+ FRGK
Sbjct: 587 SRSIAARGKTGSDRRPGKKLSVVGFRGK 614
>At4g01750.1 68417.m00227 expressed protein T15B16.8
Length = 367
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/57 (28%), Positives = 22/57 (38%)
Frame = +3
Query: 309 PLSMLQRLTEDYEYSSVLDQAAKFDDPAQQLAYVAAFTVSSYATTACRTNKPFNPLL 479
PL + Y+S L AK + LA A F ++ C + PF P L
Sbjct: 58 PLLLFPNKVSSPSYASSLSPHAKSEWRNYTLAQAAKFVATNGTVIVCAVSSPFLPFL 114
>At2g11570.1 68415.m01245 hypothetical protein
Length = 305
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -1
Query: 443 GGRVRGDCECGDVGELLRGVIELG 372
GG RGDC+ G G RGV E G
Sbjct: 78 GGDFRGDCDTGFDGGDYRGVAETG 101
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,062,869
Number of Sequences: 28952
Number of extensions: 322471
Number of successful extensions: 1459
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1447
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1775300800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -