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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30857
         (883 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|ch...    32   0.094
SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr...    31   0.29 
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M...    29   0.88 
SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|c...    28   2.0  
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    27   3.5  
SPAC688.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   4.7  
SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate transa...    26   6.2  
SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual      26   8.2  
SPAC15A10.13 |ppk3||serine/threonine protein kinase Ppk3|Schizos...    26   8.2  
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom...    26   8.2  

>SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 538

 Score = 32.3 bits (70), Expect = 0.094
 Identities = 21/60 (35%), Positives = 29/60 (48%)
 Frame = +3

Query: 375 LAPLRANVKEQGDLVRKLKEEKAPEIDIKKAVAELKTRKKILEDKS*ASHPRKICLTVLK 554
           L  +   +  QG+LVR LK + A + DI K VA+L   K +    S  S  +K     LK
Sbjct: 5   LVDINERITSQGNLVRSLKSQGASKEDIDKEVAKLLQLKNLKLGGSEVSGKKKDTSFTLK 64


>SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 652

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 567 LKGAFFYDQSFAIYGGLLGQFDF 635
           +K  FF+  SF IYGG+ G +D+
Sbjct: 19  MKKRFFFSPSFQIYGGISGLYDY 41



 Score = 29.5 bits (63), Expect = 0.66
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +2

Query: 539 FDRAKMEDLIKRRFFL*PVFCYIWWITG 622
           FDR + E+L+K+RFF  P F     I+G
Sbjct: 10  FDRTQFEELMKKRFFFSPSFQIYGGISG 37



 Score = 27.1 bits (57), Expect = 3.5
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +1

Query: 634 FGPMGCALKSNMIPLYGKKFFI 699
           +GP G AL+SN++ ++ K F I
Sbjct: 41  YGPPGSALQSNLVDIWRKHFVI 62


>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 468

 Score = 29.1 bits (62), Expect = 0.88
 Identities = 20/69 (28%), Positives = 40/69 (57%)
 Frame = +3

Query: 288 WGSNKLHRKIKIPNPFREIIMADPKIEEILAPLRANVKEQGDLVRKLKEEKAPEIDIKKA 467
           +G+ K    + +P PF +    D  +E++ + + A+ KEQ D V K + EKA + +I+K 
Sbjct: 375 FGTIKEFDFVGVPAPFTKS-QVDSAVEQLKSRI-AHFKEQQDSVTKQRIEKAKQ-EIEKL 431

Query: 468 VAELKTRKK 494
            A+  ++++
Sbjct: 432 EAKYNSKEE 440


>SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 683

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +3

Query: 306 HRKIKIPNPFREIIMADPKIEEILAPLRANVKEQGDLVRKLK 431
           HRK+ I +  R+II+ D + E +  PL+       DL  +LK
Sbjct: 626 HRKVVISSTARKIIVLDKERERVELPLQEASAFSEDLRSRLK 667


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -1

Query: 418 TKSPCSFTLALKGARISSILG-SAIMISRK 332
           T SPCSFT+    AR+ S+ G S + + R+
Sbjct: 60  TLSPCSFTICSLRARLHSLHGPSTVFLKRE 89


>SPAC688.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 167

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +3

Query: 339 EIIMADPKIEEILAPLRANVKEQGDLVRKLKEEK 440
           E+  A+P+ E +LA  +  +KEQ +   + KE+K
Sbjct: 121 EVACANPEDEALLAERKQRLKEQREKKEQKKEQK 154


>SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate
           transaminase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 696

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 14/27 (51%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = -1

Query: 880 FPRGAL*LKGS-KPESTHPGFKNPWVN 803
           FP  A  L G+ KP S HP F NP  N
Sbjct: 216 FPEPAEGLPGTPKPTSLHPVFSNPATN 242


>SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 656

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -2

Query: 681 IKWNHVTLKCTSHRTKNQTGPVIHHI*QKTGHR 583
           I +NHV +  T   T N  G V   + Q++GHR
Sbjct: 513 ISYNHVRVPPTRIFTINSAGEVHIELLQRSGHR 545


>SPAC15A10.13 |ppk3||serine/threonine protein kinase
           Ppk3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 637

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 13/48 (27%), Positives = 21/48 (43%)
 Frame = +3

Query: 366 EEILAPLRANVKEQGDLVRKLKEEKAPEIDIKKAVAELKTRKKILEDK 509
           E + AP + N       +       +P ID+KK   ELK     +++K
Sbjct: 537 ENVSAPAKFNGSFWSKFIHSSSASPSPSIDMKKESLELKNDTTEIKEK 584


>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
           Eng2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 706

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -1

Query: 673 ESCYS*VH-IP*DQKSNWPSNPPYIAKDWS*KKAP 572
           E C   +H IP    S +  +P Y+ +DW+ K AP
Sbjct: 613 EYCKQGIHMIPTTPISGYLRSPSYVQQDWNAKIAP 647


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,379,731
Number of Sequences: 5004
Number of extensions: 68026
Number of successful extensions: 156
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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