BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS30857 (883 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|ch... 32 0.094 SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr... 31 0.29 SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M... 29 0.88 SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|c... 28 2.0 SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch... 27 3.5 SPAC688.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 4.7 SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate transa... 26 6.2 SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual 26 8.2 SPAC15A10.13 |ppk3||serine/threonine protein kinase Ppk3|Schizos... 26 8.2 SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom... 26 8.2 >SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|chr 2|||Manual Length = 538 Score = 32.3 bits (70), Expect = 0.094 Identities = 21/60 (35%), Positives = 29/60 (48%) Frame = +3 Query: 375 LAPLRANVKEQGDLVRKLKEEKAPEIDIKKAVAELKTRKKILEDKS*ASHPRKICLTVLK 554 L + + QG+LVR LK + A + DI K VA+L K + S S +K LK Sbjct: 5 LVDINERITSQGNLVRSLKSQGASKEDIDKEVAKLLQLKNLKLGGSEVSGKKKDTSFTLK 64 >SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr 1|||Manual Length = 652 Score = 30.7 bits (66), Expect = 0.29 Identities = 11/23 (47%), Positives = 16/23 (69%) Frame = +3 Query: 567 LKGAFFYDQSFAIYGGLLGQFDF 635 +K FF+ SF IYGG+ G +D+ Sbjct: 19 MKKRFFFSPSFQIYGGISGLYDY 41 Score = 29.5 bits (63), Expect = 0.66 Identities = 13/28 (46%), Positives = 18/28 (64%) Frame = +2 Query: 539 FDRAKMEDLIKRRFFL*PVFCYIWWITG 622 FDR + E+L+K+RFF P F I+G Sbjct: 10 FDRTQFEELMKKRFFFSPSFQIYGGISG 37 Score = 27.1 bits (57), Expect = 3.5 Identities = 10/22 (45%), Positives = 16/22 (72%) Frame = +1 Query: 634 FGPMGCALKSNMIPLYGKKFFI 699 +GP G AL+SN++ ++ K F I Sbjct: 41 YGPPGSALQSNLVDIWRKHFVI 62 >SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||Manual Length = 468 Score = 29.1 bits (62), Expect = 0.88 Identities = 20/69 (28%), Positives = 40/69 (57%) Frame = +3 Query: 288 WGSNKLHRKIKIPNPFREIIMADPKIEEILAPLRANVKEQGDLVRKLKEEKAPEIDIKKA 467 +G+ K + +P PF + D +E++ + + A+ KEQ D V K + EKA + +I+K Sbjct: 375 FGTIKEFDFVGVPAPFTKS-QVDSAVEQLKSRI-AHFKEQQDSVTKQRIEKAKQ-EIEKL 431 Query: 468 VAELKTRKK 494 A+ ++++ Sbjct: 432 EAKYNSKEE 440 >SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|chr 1|||Manual Length = 683 Score = 27.9 bits (59), Expect = 2.0 Identities = 15/42 (35%), Positives = 23/42 (54%) Frame = +3 Query: 306 HRKIKIPNPFREIIMADPKIEEILAPLRANVKEQGDLVRKLK 431 HRK+ I + R+II+ D + E + PL+ DL +LK Sbjct: 626 HRKVVISSTARKIIVLDKERERVELPLQEASAFSEDLRSRLK 667 >SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual Length = 845 Score = 27.1 bits (57), Expect = 3.5 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%) Frame = -1 Query: 418 TKSPCSFTLALKGARISSILG-SAIMISRK 332 T SPCSFT+ AR+ S+ G S + + R+ Sbjct: 60 TLSPCSFTICSLRARLHSLHGPSTVFLKRE 89 >SPAC688.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 167 Score = 26.6 bits (56), Expect = 4.7 Identities = 12/34 (35%), Positives = 21/34 (61%) Frame = +3 Query: 339 EIIMADPKIEEILAPLRANVKEQGDLVRKLKEEK 440 E+ A+P+ E +LA + +KEQ + + KE+K Sbjct: 121 EVACANPEDEALLAERKQRLKEQREKKEQKKEQK 154 >SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate transaminase |Schizosaccharomyces pombe|chr 2|||Manual Length = 696 Score = 26.2 bits (55), Expect = 6.2 Identities = 14/27 (51%), Positives = 15/27 (55%), Gaps = 1/27 (3%) Frame = -1 Query: 880 FPRGAL*LKGS-KPESTHPGFKNPWVN 803 FP A L G+ KP S HP F NP N Sbjct: 216 FPEPAEGLPGTPKPTSLHPVFSNPATN 242 >SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual Length = 656 Score = 25.8 bits (54), Expect = 8.2 Identities = 13/33 (39%), Positives = 18/33 (54%) Frame = -2 Query: 681 IKWNHVTLKCTSHRTKNQTGPVIHHI*QKTGHR 583 I +NHV + T T N G V + Q++GHR Sbjct: 513 ISYNHVRVPPTRIFTINSAGEVHIELLQRSGHR 545 >SPAC15A10.13 |ppk3||serine/threonine protein kinase Ppk3|Schizosaccharomyces pombe|chr 1|||Manual Length = 637 Score = 25.8 bits (54), Expect = 8.2 Identities = 13/48 (27%), Positives = 21/48 (43%) Frame = +3 Query: 366 EEILAPLRANVKEQGDLVRKLKEEKAPEIDIKKAVAELKTRKKILEDK 509 E + AP + N + +P ID+KK ELK +++K Sbjct: 537 ENVSAPAKFNGSFWSKFIHSSSASPSPSIDMKKESLELKNDTTEIKEK 584 >SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharomyces pombe|chr 1|||Manual Length = 706 Score = 25.8 bits (54), Expect = 8.2 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%) Frame = -1 Query: 673 ESCYS*VH-IP*DQKSNWPSNPPYIAKDWS*KKAP 572 E C +H IP S + +P Y+ +DW+ K AP Sbjct: 613 EYCKQGIHMIPTTPISGYLRSPSYVQQDWNAKIAP 647 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,379,731 Number of Sequences: 5004 Number of extensions: 68026 Number of successful extensions: 156 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 150 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 156 length of database: 2,362,478 effective HSP length: 72 effective length of database: 2,002,190 effective search space used: 442483990 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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