Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30857
         (883 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_04_0038 - 15339047-15339230,15339683-15339741,15340031-153401...    34   0.13 
01_06_0343 + 28566513-28566644,28566791-28568494,28569178-285692...    32   0.70 
04_04_0987 + 29938486-29938505,29938667-29938859,29938961-29941036     31   1.6  
09_04_0287 - 16407324-16407551,16407647-16407748,16407824-164079...    30   2.1  
02_01_0265 - 1754861-1755063,1755186-1755360,1755558-1755653,175...    29   3.7  
04_03_0791 + 19685720-19685914,19686436-19686459,19686823-196872...    29   6.5  
05_05_0360 - 24395993-24397540,24397626-24397730,24398731-24399111     28   8.6  

>01_04_0038 -
           15339047-15339230,15339683-15339741,15340031-15340160,
           15340248-15340498,15340632-15341225,15342050-15342511
          Length = 559

 Score = 34.3 bits (75), Expect = 0.13
 Identities = 19/43 (44%), Positives = 25/43 (58%)
 Frame = +3

Query: 366 EEILAPLRANVKEQGDLVRKLKEEKAPEIDIKKAVAELKTRKK 494
           E  +   R  VKE+GD V +LK  KA + +I  AVAEL   K+
Sbjct: 222 ESDIEAARVVVKEKGDAVAQLKAAKASKQEITAAVAELNKAKE 264


>01_06_0343 +
           28566513-28566644,28566791-28568494,28569178-28569240,
           28569241-28569310,28570438-28570715,28571886-28571963,
           28573017-28573715,28573811-28573913,28574096-28574196,
           28574272-28574446,28574843-28575013,28575534-28575634,
           28575706-28575771
          Length = 1246

 Score = 31.9 bits (69), Expect = 0.70
 Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
 Frame = +3

Query: 294 SNKLHRKIKIPNPFREIIMADPKIEEILAPLRANVKEQG-DLVRKLKEEKAPEIDIKKAV 470
           + ++  K+ + N   E++ A+ ++   +    A   E   D  R+ KEE   +  +K A 
Sbjct: 243 AREMEAKLAVTNSDVEVLQAEMELVRAMEKSHAKSDEAAEDAARRKKEEAQDKALLKTAE 302

Query: 471 AELKTRKKILE 503
           AEL   KK LE
Sbjct: 303 AELDAAKKELE 313


>04_04_0987 + 29938486-29938505,29938667-29938859,29938961-29941036
          Length = 762

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 18/67 (26%), Positives = 31/67 (46%)
 Frame = +3

Query: 282 QQWGSNKLHRKIKIPNPFREIIMADPKIEEILAPLRANVKEQGDLVRKLKEEKAPEIDIK 461
           ++W S +L     I     EII A  ++++ L  ++    E  +L  KLK  +A  ++  
Sbjct: 542 EEWQSKELSFVNSIKKSEEEIINARAQMDKTLEAVKGKESENAELQEKLKHLEAQLMEAN 601

Query: 462 KAVAELK 482
           K   E K
Sbjct: 602 KTCEEAK 608


>09_04_0287 -
           16407324-16407551,16407647-16407748,16407824-16407922,
           16408213-16408332,16408513-16408632,16408740-16408834,
           16409109-16409365,16410134-16410309,16410401-16410587,
           16410656-16411002,16411722-16411823,16411917-16412414,
           16412520-16412624
          Length = 811

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +3

Query: 375 LAPLRANVKEQGDLVRKLKEEKAPE 449
           L+PL   VKE+G L+  +KEEKA +
Sbjct: 88  LSPLTVPVKEEGQLLEPVKEEKADD 112


>02_01_0265 -
           1754861-1755063,1755186-1755360,1755558-1755653,
           1756110-1756256,1756343-1756511,1756661-1756812,
           1756898-1756968,1757064-1757247,1757332-1757523,
           1757664-1757771
          Length = 498

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +3

Query: 336 REIIMADPKIEEILAPLRANVKEQGDLVRKLKEEKAPEIDIKKAVAELK 482
           +E+  +   ++E+ A L+ANV    +  RK++E K    D+K   A L+
Sbjct: 144 QELKSSKRSLDELTAMLKANVDAINNFTRKMEELKRQRDDLKALEANLE 192


>04_03_0791 +
           19685720-19685914,19686436-19686459,19686823-19687205,
           19687282-19687379,19687622-19687800,19687912-19688136,
           19688619-19688678,19688816-19688896,19688983-19689388,
           19690035-19690285
          Length = 633

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +3

Query: 567 LKGAFFYDQSFAIYGGLLGQFDFWSYGMCT*E*HDSTLWEEVFYSS 704
           L+   FY  SF IYGG+ G +D+   G C  + +    W ++  S+
Sbjct: 26  LERRLFYVPSFKIYGGVAGLYDYGPPG-CAVKANVLAFWRQMCRST 70


>05_05_0360 - 24395993-24397540,24397626-24397730,24398731-24399111
          Length = 677

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +3

Query: 339 EIIMADPKIEEILAPLRANVKEQGDLVRKLKEEKA 443
           E++ A  +I E+ A  R+  K+   LVR L EEKA
Sbjct: 213 ELLQAHNRIHELEAESRSAKKKLDHLVRNLAEEKA 247


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,158,372
Number of Sequences: 37544
Number of extensions: 414385
Number of successful extensions: 838
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)