Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30857
         (883 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20226| Best HMM Match : No HMM Matches (HMM E-Value=.)             100   3e-21
SB_43621| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.13 
SB_13913| Best HMM Match : WH2 (HMM E-Value=8.8e-05)                   34   0.18 
SB_6481| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.71 
SB_42542| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.6  
SB_44003| Best HMM Match : DUF658 (HMM E-Value=1.1)                    28   8.7  

>SB_20226| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 613

 Score = 99.5 bits (237), Expect = 3e-21
 Identities = 63/144 (43%), Positives = 83/144 (57%)
 Frame = +3

Query: 348 MADPKIEEILAPLRANVKEQGDLVRKLKEEKAPEIDIKKAVAELKTRKKILEDKS*ASHP 527
           MA    EEIL+ LR +VKEQGDLVRKLKE+KAPE D++ A+ ELK RKK LE K     P
Sbjct: 1   MASANDEEILSNLRKSVKEQGDLVRKLKEDKAPENDVEIAIKELKARKKALEKKEKEIAP 60

Query: 528 RKICLTVLKWKI*LKGAFFYDQSFAIYGGLLGQFDFWSYGMCT*E*HDSTLWEEVFYSSG 707
           +       K +  LK  FF+  +F IYGG+ G +D+   G C  E +   LW++ F    
Sbjct: 61  QDESFDRGKLEDLLKRRFFFVPAFEIYGGVAGLYDYGPAG-CAMESNVINLWKKHFILEE 119

Query: 708 NKC*R*NGSILTPEPW*LQPPGHV 779
           +       ++LTP P  L+  GHV
Sbjct: 120 HML-EIRAALLTPHPV-LKASGHV 141


>SB_43621| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1122

 Score = 34.3 bits (75), Expect = 0.13
 Identities = 15/30 (50%), Positives = 21/30 (70%)
 Frame = +1

Query: 238 KQVTVLVIIYVFHTVSSGAAISFIERLKYR 327
           KQV  LV+I+VFH+ SSGA  ++  R K +
Sbjct: 188 KQVMTLVVIFVFHSQSSGAKDTYASRAKVK 217


>SB_13913| Best HMM Match : WH2 (HMM E-Value=8.8e-05)
          Length = 493

 Score = 33.9 bits (74), Expect = 0.18
 Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 12/96 (12%)
 Frame = +3

Query: 312 KIKIPNPFREIIMADPKIEE----ILAPLRANVKEQGDLVRKLKEEKAP---EIDIKKAV 470
           K K+  P RE+I + PK++E    +  PLR  ++ +  L    K    P   EI+ K  +
Sbjct: 312 KKKLATPLREVIKSKPKLKETKKKLATPLRKEIQSKPALKETKKRLATPIRAEIESKPKL 371

Query: 471 AELKTR-----KKILEDKS*ASHPRKICLTVLKWKI 563
            E K +     +  +E+K    H +K+  T L+ +I
Sbjct: 372 KETKKKLATPVRAEIENKPKLRHTKKVMETALQDEI 407


>SB_6481| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 610

 Score = 31.9 bits (69), Expect = 0.71
 Identities = 20/52 (38%), Positives = 27/52 (51%)
 Frame = +3

Query: 357 PKIEEILAPLRANVKEQGDLVRKLKEEKAPEIDIKKAVAELKTRKKILEDKS 512
           PK+ + L  L   +KE   L  KL EE    I +KK V EL+    IL+ K+
Sbjct: 267 PKVLDYLQSLETQIKEVNLLNDKLSEE---NIKLKKRVQELENENNILKAKN 315


>SB_42542| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 574

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 19/57 (33%), Positives = 28/57 (49%)
 Frame = +1

Query: 628 LIFGPMGCALKSNMIPLYGKKFFILPGTNVRGRMAQFLLQNPGNSSLQVMLEKICQD 798
           +I GP+G    S ++ + G+   I    +VRGR+A F     G    +   EKI QD
Sbjct: 187 IITGPVGGGKSSLLLSILGEIPLISGSISVRGRIAYFPQIPFGKQMEEESREKIGQD 243


>SB_44003| Best HMM Match : DUF658 (HMM E-Value=1.1)
          Length = 572

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 19/72 (26%), Positives = 31/72 (43%)
 Frame = -2

Query: 735 LSHSTSNICSRKNKKLLPIKWNHVTLKCTSHRTKNQTGPVIHHI*QKTGHRKKRLLIRSS 556
           ++ + SN+  +K  K  P+   + T   T H TK +              RK +L + SS
Sbjct: 145 VNSTPSNVLKKKKTKQTPLVSKNETYALTLHETKTKKKTKKRSKLATEKPRKNKLRLNSS 204

Query: 555 ILARSNKSSAGA 520
               S+ SSA +
Sbjct: 205 TSTSSSLSSASS 216


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,528,300
Number of Sequences: 59808
Number of extensions: 490467
Number of successful extensions: 969
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 964
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2514529411
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)