Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30857
         (883 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23412-2|AAN65294.1|  678|Caenorhabditis elegans Glycyl trna syn...   114   9e-26
U23412-1|AAK21465.2|  742|Caenorhabditis elegans Glycyl trna syn...   114   9e-26
U00065-9|AAA50738.2| 1009|Caenorhabditis elegans Hypothetical pr...    31   1.4  
U70852-6|AAK29814.1|  226|Caenorhabditis elegans Pur alpha like ...    30   2.5  
Z81083-3|CAB03104.1|  559|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>U23412-2|AAN65294.1|  678|Caenorhabditis elegans Glycyl trna
           synthetase protein1, isoform b protein.
          Length = 678

 Score =  114 bits (274), Expect = 9e-26
 Identities = 70/144 (48%), Positives = 88/144 (61%)
 Frame = +3

Query: 348 MADPKIEEILAPLRANVKEQGDLVRKLKEEKAPEIDIKKAVAELKTRKKILEDKS*ASHP 527
           MA P+IE  LAPLRA VKE GDL+R LK + AP+IDI KAV ELK RK++LED   A  P
Sbjct: 1   MATPEIEAKLAPLRAAVKEYGDLIRDLKAKGAPKIDIDKAVVELKARKRLLEDTEIALAP 60

Query: 528 RKICLTVLKWKI*LKGAFFYDQSFAIYGGLLGQFDFWSYGMCT*E*HDSTLWEEVFYSSG 707
           ++     LK +  LK  FFYDQSFAIYGG+ G +DF   G C+ + +    W + F    
Sbjct: 61  KEASFDRLKLEDLLKRRFFYDQSFAIYGGVTGLYDFGPMG-CSLKANMLQEWRKHFILEE 119

Query: 708 NKC*R*NGSILTPEPW*LQPPGHV 779
                 + + LTPEP  L+  GHV
Sbjct: 120 GML-EVDCTSLTPEPV-LKASGHV 141


>U23412-1|AAK21465.2|  742|Caenorhabditis elegans Glycyl trna
           synthetase protein1, isoform a protein.
          Length = 742

 Score =  114 bits (274), Expect = 9e-26
 Identities = 70/144 (48%), Positives = 88/144 (61%)
 Frame = +3

Query: 348 MADPKIEEILAPLRANVKEQGDLVRKLKEEKAPEIDIKKAVAELKTRKKILEDKS*ASHP 527
           MA P+IE  LAPLRA VKE GDL+R LK + AP+IDI KAV ELK RK++LED   A  P
Sbjct: 65  MATPEIEAKLAPLRAAVKEYGDLIRDLKAKGAPKIDIDKAVVELKARKRLLEDTEIALAP 124

Query: 528 RKICLTVLKWKI*LKGAFFYDQSFAIYGGLLGQFDFWSYGMCT*E*HDSTLWEEVFYSSG 707
           ++     LK +  LK  FFYDQSFAIYGG+ G +DF   G C+ + +    W + F    
Sbjct: 125 KEASFDRLKLEDLLKRRFFYDQSFAIYGGVTGLYDFGPMG-CSLKANMLQEWRKHFILEE 183

Query: 708 NKC*R*NGSILTPEPW*LQPPGHV 779
                 + + LTPEP  L+  GHV
Sbjct: 184 GML-EVDCTSLTPEPV-LKASGHV 205


>U00065-9|AAA50738.2| 1009|Caenorhabditis elegans Hypothetical
           protein D1044.6 protein.
          Length = 1009

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 14/55 (25%), Positives = 34/55 (61%)
 Frame = +3

Query: 369 EILAPLRANVKEQGDLVRKLKEEKAPEIDIKKAVAELKTRKKILEDKS*ASHPRK 533
           ++ A L  + + Q ++ R++++E     ++++ +AE K RK++LED+  A   ++
Sbjct: 405 QMTAALEESTRRQAEMNRQIEDEARKRDELQR-IAEEKKRKQLLEDQCRAKQEKE 458


>U70852-6|AAK29814.1|  226|Caenorhabditis elegans Pur alpha like
           protein protein 1 protein.
          Length = 226

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
 Frame = +1

Query: 571 KALFSMTSLLLYMVDYWASLIFGPMGCAL-KSNMIPLYGKKFFILPGTNVRGRMAQF--L 741
           KA+ S  S +L ++D  ++    P   +L KS  + + G+KF++    NVRGR  +   +
Sbjct: 63  KAIVSEISKMLALIDEPSTGEHAPKESSLIKSETLNVDGRKFYVDLKENVRGRFLRIAQM 122

Query: 742 LQNPGNSSLQVML 780
             NP  +  Q+ +
Sbjct: 123 PMNPRQTRQQIAI 135


>Z81083-3|CAB03104.1|  559|Caenorhabditis elegans Hypothetical
           protein F44F1.4 protein.
          Length = 559

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
 Frame = +3

Query: 399 KEQGDLVRKLKE-EKAPEIDIKKAVAELKTRKKILEDK 509
           +E+   V K++E EK  +  I K++ EL+  KK+LE+K
Sbjct: 388 EEEQQKVLKIQELEKQKDEQIMKSMLELEDMKKLLEEK 425


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,378,409
Number of Sequences: 27780
Number of extensions: 373425
Number of successful extensions: 985
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 980
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)