Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30857
         (883 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g29880.1 68414.m03652 glycyl-tRNA synthetase / glycine--tRNA ...    38   0.012
At5g56680.1 68418.m07075 asparaginyl-tRNA synthetase 1, cytoplas...    32   0.44 
At5g46795.1 68418.m05765 expressed protein                             30   2.4  
At5g16790.1 68418.m01966 expressed protein                             29   5.4  
At2g10110.1 68415.m01050 hypothetical protein                          29   5.4  
At4g21180.1 68417.m03063 DNAJ heat shock N-terminal domain-conta...    28   7.2  
At3g02950.1 68416.m00290 expressed protein                             28   7.2  
At5g14600.1 68418.m01712 expressed protein                             28   9.5  
At1g64330.1 68414.m07290 myosin heavy chain-related similar to m...    28   9.5  

>At1g29880.1 68414.m03652 glycyl-tRNA synthetase / glycine--tRNA
           ligase identical to SP|O23627 Glycyl-tRNA synthetase (EC
           6.1.1.14) (Glycine--tRNA ligase) (GlyRS) {Arabidopsis
           thaliana}
          Length = 729

 Score = 37.5 bits (83), Expect = 0.012
 Identities = 42/151 (27%), Positives = 68/151 (45%), Gaps = 9/151 (5%)
 Frame = +3

Query: 354 DPKIEEILAPLRANVKEQGDLVRKLKEEKA--PEID-----IKKAVAELKTRKKILEDKS 512
           +  + + L+   ++V+ QG+ VR LK  +A  PEID     + K   E  T +K L+   
Sbjct: 44  EQSLRQSLSEKSSSVEAQGNAVRALKASRAAKPEIDAAIEQLNKLKLEKSTVEKELQSII 103

Query: 513 *ASHPRKICLTVLKWKI*--LKGAFFYDQSFAIYGGLLGQFDFWSYGMCT*E*HDSTLWE 686
            +S    +     +  +   L+   FY  SF IY G+ G FD+   G C  + +  + W 
Sbjct: 104 SSSGNGSLNREAFRKAVVNTLERRLFYIPSFKIYSGVAGLFDYGPPG-CAIKSNVLSFWR 162

Query: 687 EVFYSSGNKC*R*NGSILTPEPW*LQPPGHV 779
           + F    N     +   +TPE   L+  GHV
Sbjct: 163 QHFILEENML-EVDCPCVTPEVV-LKASGHV 191



 Score = 28.3 bits (60), Expect = 7.2
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +1

Query: 634 FGPMGCALKSNMIPLYGKKFFI 699
           +GP GCA+KSN++  + + F +
Sbjct: 146 YGPPGCAIKSNVLSFWRQHFIL 167


>At5g56680.1 68418.m07075 asparaginyl-tRNA synthetase 1, cytoplasmic
           / asparagine-tRNA ligase 1 (SYNC1) identical to
           SP|Q9SW96
          Length = 572

 Score = 32.3 bits (70), Expect = 0.44
 Identities = 20/53 (37%), Positives = 30/53 (56%)
 Frame = +3

Query: 336 REIIMADPKIEEILAPLRANVKEQGDLVRKLKEEKAPEIDIKKAVAELKTRKK 494
           +++I   P  E  +   R  V E+G++V +LK  KA +  I  AVAELK  K+
Sbjct: 224 QDLIDNPPPTEADVEAARLIVIERGNVVAELKAAKASKEAITAAVAELKIAKE 276


>At5g46795.1 68418.m05765 expressed protein
          Length = 192

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = +3

Query: 411 DLVRKLKEEKAPEIDIKKAVAELKTRKKILEDKS*ASHPRK 533
           ++  K++EEK  EI+++K + E K +K    D +    P+K
Sbjct: 135 EMEEKIEEEKEEEINVEKPLLEKKNKKTKKNDANETCKPKK 175


>At5g16790.1 68418.m01966 expressed protein
          Length = 233

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
 Frame = +3

Query: 336 REIIMADPKIEEILAPLRANV-----KEQGDLVRKLKEEKAPEIDIKKAVAELKTRKKIL 500
           R+I+ A   IE++   L  +      KE+ + +RKL   + P  + +K + ELK     L
Sbjct: 116 RQIMQAQADIEDLKKQLEESKIERQQKEECEAIRKLISAQPPRSETQKVIHELKKEIAEL 175

Query: 501 EDKS*AS 521
           E ++ AS
Sbjct: 176 EAENTAS 182


>At2g10110.1 68415.m01050 hypothetical protein
          Length = 169

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 8/79 (10%)
 Frame = -2

Query: 819 KTPGSIKVLANLLQHDLEAGVTRVLE*ELSHSTSNICSRKNKKLLPIKWNHVTLKC---- 652
           + PG +      + H      T ++     HST++  +R +  ++    NH T KC    
Sbjct: 10  RPPGRVVTFTASIHHSTTWSSTTII----IHSTNHSTNRSSITIIIHSTNHSTNKCSITI 65

Query: 651 ----TSHRTKNQTGPVIHH 607
               T+H T   +  +IHH
Sbjct: 66  IIHSTNHSTTKSSSTIIHH 84


>At4g21180.1 68417.m03063 DNAJ heat shock N-terminal
           domain-containing protein / sec63 domain-containing
           protein similar to SP|Q9UGP8 Translocation protein SEC63
           homolog {Homo sapiens}; contains Pfam profiles PF00226
           DnaJ domain, PF02889 Sec63 domain
          Length = 661

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +3

Query: 309 RKIKIPNPFREIIMADPKIEEILAPLRANVKEQGDLVRKLKEE 437
           +K+K  +    I  A   I E + PL A+VKE  D V++  E+
Sbjct: 514 QKVKFMDEAGAIAAASNTITETMEPLGASVKETNDAVKEAVEK 556


>At3g02950.1 68416.m00290 expressed protein
          Length = 236

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
 Frame = +3

Query: 336 REIIMADPKIEEILAPLRANV-----KEQGDLVRKLKEEKAPEIDIKKAVAELKTRKKIL 500
           R+I+ A  +IE++   L  +      KE+ + +RKL   + P  + +K + EL      L
Sbjct: 117 RQIMQAKAEIEDLKKQLEESKIDRQHKEECETIRKLISAQPPRSETEKVIYELNKEIAEL 176

Query: 501 EDKS*AS 521
           E +S AS
Sbjct: 177 EAESTAS 183


>At5g14600.1 68418.m01712 expressed protein
          Length = 318

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/34 (47%), Positives = 18/34 (52%)
 Frame = -3

Query: 878 SKGGPLIKRVKAGKHSPWF*KPLGQSKSWQIFSN 777
           SK G L  R    KHS W  KPLG     ++FSN
Sbjct: 37  SKDGVLQNRFGVYKHSDWIGKPLGT----KVFSN 66


>At1g64330.1 68414.m07290 myosin heavy chain-related similar to
           myosin heavy chain (GI:1850913) [Entamoeba histolytica];
           similar to Intracellular protein transport protein USO1
           (Swiss-Prot:P25386) [Saccharomyces cerevisiae]
          Length = 555

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/59 (27%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
 Frame = +3

Query: 336 REIIMADPKIEEILAPLRANVKEQGDLVRKLKEEKAP-EIDIKKAVAELKTRKKILEDK 509
           RE  + D  +EE +  LR  V+ +GD +  L E+ +  E+ ++ +  +L+  +++L +K
Sbjct: 333 RESAIVD--LEETVESLRNEVERKGDEIESLMEKMSNIEVKLRLSNQKLRVTEQVLTEK 389


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,486,224
Number of Sequences: 28952
Number of extensions: 351096
Number of successful extensions: 788
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2077687200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)