BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS30856 (765 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom... 27 2.2 SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce... 27 3.9 SPCC1259.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 26 6.8 >SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharomyces pombe|chr 2|||Manual Length = 1016 Score = 27.5 bits (58), Expect = 2.2 Identities = 20/72 (27%), Positives = 32/72 (44%) Frame = +3 Query: 411 LNASKAEASLAESGKDMLTVEPRESGGSKQCDLLVAFRIQNARRDVEAHLDRGDRCYRFF 590 LNA + ++ L + L +G SKQ +++VA R ++ R R DR F Sbjct: 203 LNARRPQSGLLKITVGSLRNVTHSAGISKQTEMIVAIRAEDLER-ARTRPSRTDRFNETF 261 Query: 591 S*HVHHGSEVRI 626 + +EV I Sbjct: 262 EIDLEKTNEVEI 273 >SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces pombe|chr 2|||Manual Length = 568 Score = 26.6 bits (56), Expect = 3.9 Identities = 15/64 (23%), Positives = 33/64 (51%) Frame = +3 Query: 375 AGGAN*PSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQCDLLVAFRIQNARRDVEA 554 A A +A A +AEA E+ K+++ EP+++ +K+ ++ + +++R V Sbjct: 89 AAEAEAAAAARAAAAKEAEAKRLEAAKNIVLKEPKDAPAAKKIAIIDSTNFRDSRVRVNG 148 Query: 555 HLDR 566 + R Sbjct: 149 WVHR 152 >SPCC1259.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual Length = 168 Score = 25.8 bits (54), Expect = 6.8 Identities = 8/31 (25%), Positives = 21/31 (67%) Frame = +1 Query: 559 WIAEIDAIGFFLNTCITAPKSGYNSVRCRGL 651 W++++ A+ N+ ++ PKS ++ ++ RG+ Sbjct: 104 WLSKLTALSKSTNSTLSTPKSFHSPLQSRGI 134 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,213,795 Number of Sequences: 5004 Number of extensions: 66763 Number of successful extensions: 167 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 162 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 167 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 367316502 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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