Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30856
         (765 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    27   2.2  
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce...    27   3.9  
SPCC1259.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   6.8  

>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 20/72 (27%), Positives = 32/72 (44%)
 Frame = +3

Query: 411 LNASKAEASLAESGKDMLTVEPRESGGSKQCDLLVAFRIQNARRDVEAHLDRGDRCYRFF 590
           LNA + ++ L +     L      +G SKQ +++VA R ++  R       R DR    F
Sbjct: 203 LNARRPQSGLLKITVGSLRNVTHSAGISKQTEMIVAIRAEDLER-ARTRPSRTDRFNETF 261

Query: 591 S*HVHHGSEVRI 626
              +   +EV I
Sbjct: 262 EIDLEKTNEVEI 273


>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 568

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 15/64 (23%), Positives = 33/64 (51%)
 Frame = +3

Query: 375 AGGAN*PSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQCDLLVAFRIQNARRDVEA 554
           A  A   +A     A +AEA   E+ K+++  EP+++  +K+  ++ +   +++R  V  
Sbjct: 89  AAEAEAAAAARAAAAKEAEAKRLEAAKNIVLKEPKDAPAAKKIAIIDSTNFRDSRVRVNG 148

Query: 555 HLDR 566
            + R
Sbjct: 149 WVHR 152


>SPCC1259.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 168

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 8/31 (25%), Positives = 21/31 (67%)
 Frame = +1

Query: 559 WIAEIDAIGFFLNTCITAPKSGYNSVRCRGL 651
           W++++ A+    N+ ++ PKS ++ ++ RG+
Sbjct: 104 WLSKLTALSKSTNSTLSTPKSFHSPLQSRGI 134


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,213,795
Number of Sequences: 5004
Number of extensions: 66763
Number of successful extensions: 167
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)