Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30856
         (765 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0774 + 20478203-20479393                                         32   0.58 
05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581     29   4.1  
01_07_0197 + 41912207-41912652,41913226-41913800,41913828-419157...    29   4.1  
09_04_0560 - 18519024-18519145,18519330-18519435,18519671-185199...    28   7.1  
08_02_1283 - 25861355-25862755                                         28   7.1  
07_03_0626 + 20060013-20060273,20061017-20061274                       28   7.1  
01_05_0382 - 21661973-21662124,21662367-21662659,21662994-216631...    28   7.1  
12_01_0477 + 3742751-3745200,3747192-3747502,3747886-3748232           28   9.4  
10_08_0777 + 20489528-20490649                                         28   9.4  

>10_08_0774 + 20478203-20479393
          Length = 396

 Score = 31.9 bits (69), Expect = 0.58
 Identities = 16/32 (50%), Positives = 23/32 (71%)
 Frame = -3

Query: 520 NATSKSHCLEPPDSRGSTVSISLPDSARLASA 425
           NAT+ S+CL PPD+ G + ++ L  SA+LA A
Sbjct: 192 NATAFSYCLAPPDT-GKSSALFLGASAKLAGA 222


>05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581
          Length = 311

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +3

Query: 345 GHLVHALGRAAGGAN*P-SAGLCLNASKAEASLA 443
           G LV  L R  GG     SAG+C   S+ +ASLA
Sbjct: 203 GRLVETLARDGGGGGGAYSAGVCFYGSRMDASLA 236


>01_07_0197 +
           41912207-41912652,41913226-41913800,41913828-41915748,
           41915836-41916049,41916143-41916394,41916469-41916528,
           41916646-41916776,41916898-41917012,41917084-41917239
          Length = 1289

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +1

Query: 73  YKEFLARG-ARKVTTGITGLWQPSVHSDVAF*SFDVG 180
           YK F A G  RKV  GIT  + PS+  D+AF S  +G
Sbjct: 633 YKIFQAFGLVRKVEKGITRWYYPSMLDDLAFDSAALG 669


>09_04_0560 -
           18519024-18519145,18519330-18519435,18519671-18519907,
           18521371-18521810,18523215-18525012
          Length = 900

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -1

Query: 714 DGCSTEHNTPARKRKSSTDYSEPPTSN*VISG 619
           DG   EH  P+++R+   D++  P S  V+ G
Sbjct: 5   DGFGCEHRRPSKRRRDGPDHALLPVSREVLMG 36


>08_02_1283 - 25861355-25862755
          Length = 466

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -2

Query: 716 RTAVLPSTTPRPGNGSRLQTIPSPRHRTELYPDFGAVMHVL 594
           R AVL  ++P P   +    +P+ RHR  ++      +H+L
Sbjct: 46  RVAVLDHSSPHPSPRTAAMLVPAGRHRDWIFSTRAGHLHLL 86


>07_03_0626 + 20060013-20060273,20061017-20061274
          Length = 172

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -1

Query: 444 RLGWLRP*RRSGIIPRMVSSHHRP 373
           RLGWLRP R S ++P   S    P
Sbjct: 32  RLGWLRPSRLSAVVPASESGRVGP 55


>01_05_0382 -
           21661973-21662124,21662367-21662659,21662994-21663178,
           21663268-21664023,21664118-21664390
          Length = 552

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 16/68 (23%), Positives = 35/68 (51%)
 Frame = -2

Query: 725 IAARTAVLPSTTPRPGNGSRLQTIPSPRHRTELYPDFGAVMHVLRKKPIASISAIQMGFD 546
           +  + AV+P    R  + S L +  +P +  +  P  G+ MHV+ K    +++++++   
Sbjct: 293 VTEKYAVVPEMPLRYSSASLLASELAPFYAFDWVPASGSYMHVMCKSTGKTVASVEVPPF 352

Query: 545 VASRVLNA 522
           +A   +NA
Sbjct: 353 MAIHFINA 360


>12_01_0477 + 3742751-3745200,3747192-3747502,3747886-3748232
          Length = 1035

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -2

Query: 701 PSTTPRPGNGSRLQTIPSPRHRTELYPDF 615
           P  TP PG   R++  PSP       PD+
Sbjct: 116 PRRTPSPGRDHRIRRTPSPYRDRRRIPDY 144


>10_08_0777 + 20489528-20490649
          Length = 373

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -3

Query: 520 NATSKSHCLEPPDSRGSTVSISLPDSARLASALEA 416
           NAT+ S+CL P  + G   ++ L  SA+LA    A
Sbjct: 165 NATAFSYCLAPHGAAGKKSALLLGASAKLAGGKSA 199


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,394,340
Number of Sequences: 37544
Number of extensions: 501550
Number of successful extensions: 1302
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1301
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)