Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30856
(765 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U53337-6|AAA96188.2| 510|Caenorhabditis elegans Acetylcholine r... 29 3.6
Z69904-9|CAH60797.1| 2101|Caenorhabditis elegans Hypothetical pr... 28 8.4
Z69904-8|CAD57719.1| 2392|Caenorhabditis elegans Hypothetical pr... 28 8.4
Z69904-7|CAB54502.2| 2407|Caenorhabditis elegans Hypothetical pr... 28 8.4
Z69904-6|CAB54501.3| 2211|Caenorhabditis elegans Hypothetical pr... 28 8.4
Z66511-12|CAH60796.1| 2101|Caenorhabditis elegans Hypothetical p... 28 8.4
Z66511-11|CAD57694.1| 2392|Caenorhabditis elegans Hypothetical p... 28 8.4
Z66511-10|CAB54211.2| 2407|Caenorhabditis elegans Hypothetical p... 28 8.4
Z66511-9|CAB54210.3| 2211|Caenorhabditis elegans Hypothetical pr... 28 8.4
AC006761-2|AAF60547.1| 402|Caenorhabditis elegans Hypothetical ... 28 8.4
>U53337-6|AAA96188.2| 510|Caenorhabditis elegans Acetylcholine
receptor protein 10 protein.
Length = 510
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +2
Query: 515 RVSHSKRETRRRSPFGSRRSMLSVFFLTRASRLRSPDITQFD 640
R S S++++RRR+ RR ++ + ++ LRS TQF+
Sbjct: 378 RTSSSRQKSRRRNSKSQRRPLVLTKNVNKSHSLRSRRFTQFE 419
>Z69904-9|CAH60797.1| 2101|Caenorhabditis elegans Hypothetical protein
F07A11.6e protein.
Length = 2101
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Frame = -3
Query: 226 EQSNAWRMFXRNDRKSRHRRIKKQRRYE---RLAATS 125
EQ RM+ N+RK R +KQR+ E RLAA +
Sbjct: 1762 EQERVKRMYEENERKVEEDRREKQRKEEERQRLAAAT 1798
>Z69904-8|CAD57719.1| 2392|Caenorhabditis elegans Hypothetical protein
F07A11.6c protein.
Length = 2392
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Frame = -3
Query: 226 EQSNAWRMFXRNDRKSRHRRIKKQRRYE---RLAATS 125
EQ RM+ N+RK R +KQR+ E RLAA +
Sbjct: 2053 EQERVKRMYEENERKVEEDRREKQRKEEERQRLAAAT 2089
>Z69904-7|CAB54502.2| 2407|Caenorhabditis elegans Hypothetical protein
F07A11.6b protein.
Length = 2407
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Frame = -3
Query: 226 EQSNAWRMFXRNDRKSRHRRIKKQRRYE---RLAATS 125
EQ RM+ N+RK R +KQR+ E RLAA +
Sbjct: 2068 EQERVKRMYEENERKVEEDRREKQRKEEERQRLAAAT 2104
>Z69904-6|CAB54501.3| 2211|Caenorhabditis elegans Hypothetical protein
F07A11.6a protein.
Length = 2211
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Frame = -3
Query: 226 EQSNAWRMFXRNDRKSRHRRIKKQRRYE---RLAATS 125
EQ RM+ N+RK R +KQR+ E RLAA +
Sbjct: 1872 EQERVKRMYEENERKVEEDRREKQRKEEERQRLAAAT 1908
>Z66511-12|CAH60796.1| 2101|Caenorhabditis elegans Hypothetical
protein F07A11.6e protein.
Length = 2101
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Frame = -3
Query: 226 EQSNAWRMFXRNDRKSRHRRIKKQRRYE---RLAATS 125
EQ RM+ N+RK R +KQR+ E RLAA +
Sbjct: 1762 EQERVKRMYEENERKVEEDRREKQRKEEERQRLAAAT 1798
>Z66511-11|CAD57694.1| 2392|Caenorhabditis elegans Hypothetical
protein F07A11.6c protein.
Length = 2392
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Frame = -3
Query: 226 EQSNAWRMFXRNDRKSRHRRIKKQRRYE---RLAATS 125
EQ RM+ N+RK R +KQR+ E RLAA +
Sbjct: 2053 EQERVKRMYEENERKVEEDRREKQRKEEERQRLAAAT 2089
>Z66511-10|CAB54211.2| 2407|Caenorhabditis elegans Hypothetical
protein F07A11.6b protein.
Length = 2407
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Frame = -3
Query: 226 EQSNAWRMFXRNDRKSRHRRIKKQRRYE---RLAATS 125
EQ RM+ N+RK R +KQR+ E RLAA +
Sbjct: 2068 EQERVKRMYEENERKVEEDRREKQRKEEERQRLAAAT 2104
>Z66511-9|CAB54210.3| 2211|Caenorhabditis elegans Hypothetical protein
F07A11.6a protein.
Length = 2211
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Frame = -3
Query: 226 EQSNAWRMFXRNDRKSRHRRIKKQRRYE---RLAATS 125
EQ RM+ N+RK R +KQR+ E RLAA +
Sbjct: 1872 EQERVKRMYEENERKVEEDRREKQRKEEERQRLAAAT 1908
>AC006761-2|AAF60547.1| 402|Caenorhabditis elegans Hypothetical
protein Y41G9A.5 protein.
Length = 402
Score = 27.9 bits (59), Expect = 8.4
Identities = 17/66 (25%), Positives = 29/66 (43%)
Frame = -2
Query: 722 AARTAVLPSTTPRPGNGSRLQTIPSPRHRTELYPDFGAVMHVLRKKPIASISAIQMGFDV 543
A T + P ++ P S T SP+ T L P+ + KP+ ++ ++ +V
Sbjct: 258 ATTTEITPVSSDSPAIESTTTTTASPKTSTTLTPEPITTVPAKDVKPVTLLAFQEVSNEV 317
Query: 542 ASRVLN 525
S V N
Sbjct: 318 TSNVSN 323
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,113,110
Number of Sequences: 27780
Number of extensions: 390174
Number of successful extensions: 1056
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1056
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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