Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30856
         (765 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g33830.1 68417.m04801 glycosyl hydrolase family 10 protein xy...    29   4.5  
At4g32810.1 68417.m04667 dioxygenase-related low similarity to b...    29   4.5  
At5g18830.2 68418.m02238 squamosa promoter-binding protein-like ...    28   5.9  
At4g33840.1 68417.m04802 glycosyl hydrolase family 10 protein xy...    28   5.9  
At4g26190.1 68417.m03770 expressed protein                             28   5.9  
At3g44730.1 68416.m04814 kinesin motor protein-related similar t...    28   5.9  
At1g54020.2 68414.m06155 myrosinase-associated protein, putative...    28   7.8  

>At4g33830.1 68417.m04801 glycosyl hydrolase family 10 protein xylan
           endohydrolase isoenzyme X-I, Hordeum
           vulgare,PID:g1813595
          Length = 544

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +1

Query: 478 ESREALNNVTY*SRFAFKTRDATSKPIWIAEID 576
           ES  +  N+ Y  R A  T  AT  PIW+ EID
Sbjct: 386 ESHFSTPNIPY-MRSALDTLGATGLPIWLTEID 417


>At4g32810.1 68417.m04667 dioxygenase-related low similarity to
           b,b-carotene-9',10'-dioxygenase [Mus musculus]
           GI:12666529; contains Pfam profile PF03055: Retinal
           pigment epithelial membrane protein
          Length = 570

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/62 (25%), Positives = 31/62 (50%)
 Frame = -2

Query: 707 VLPSTTPRPGNGSRLQTIPSPRHRTELYPDFGAVMHVLRKKPIASISAIQMGFDVASRVL 528
           V+P    R    + L+  P+P ++ E  P  GA +HV+ K     ++++++   V    +
Sbjct: 315 VIPEMPLRYSVKNLLRAEPTPLYKFEWCPQDGAFIHVMSKLTGEVVASVEVPAYVTFHFI 374

Query: 527 NA 522
           NA
Sbjct: 375 NA 376


>At5g18830.2 68418.m02238 squamosa promoter-binding protein-like 7
           (SPL7) identical to squamosa promoter binding
           protein-like 7 [Arabidopsis thaliana] GI:5931635;
           contains Pfam profile PF03110: SBP domain
          Length = 775

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
 Frame = +3

Query: 258 TVVRQVSFTLLMACRCDSNTAQYERNRSFGHLVHALGRAAGGAN*PSAGL-CLNASKAEA 434
           T+V+++    L+ C CD +      N      +H   ++   +  P AGL C    +A+ 
Sbjct: 632 TLVKKMEPDSLVHCTCDCDVRLLHENMDLASDIHRKHQSPIESKDPEAGLDCKERIQADC 691

Query: 435 SLAESGKD 458
           S    GK+
Sbjct: 692 SPDSGGKE 699


>At4g33840.1 68417.m04802 glycosyl hydrolase family 10 protein xylan
           endohydrolase isoenzyme X-I, Hordeum
           vulgare,PID:g1813595
          Length = 576

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +1

Query: 478 ESREALNNVTY*SRFAFKTRDATSKPIWIAEID 576
           ES  +  N+ Y  R A  T  AT  PIW+ EID
Sbjct: 417 ESHFSTPNIPY-MRSALDTFGATGLPIWLTEID 448


>At4g26190.1 68417.m03770 expressed protein
          Length = 1067

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = +1

Query: 526  FKTRDATSKPIWIAEIDAIGFFLNTCITAPKSGYN 630
            FKT++   KP+++ ++  +   + TCI+  K  Y+
Sbjct: 944  FKTQEKKDKPLFLKDLRRVWDHIGTCISCGKRKYD 978


>At3g44730.1 68416.m04814 kinesin motor protein-related similar to 4
           other kinesin-like proteins of A. thaliana: F02P16.12
           (PID:g2191180), katA (D11371), katB (D21137), and katC
           (D21138); contains non-consensus AT-AC splice sites at
           intron 10
          Length = 1087

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/39 (43%), Positives = 20/39 (51%)
 Frame = -1

Query: 354 PNVRNCGSSRTEQYYYRNDKPSVG*N*PVSRRSTPAHVP 238
           P+ R+  + R      RN KP V  N PVSR   PA VP
Sbjct: 829 PSRRSLSTDRASTIKSRN-KPDVTQNLPVSRTPFPARVP 866


>At1g54020.2 68414.m06155 myrosinase-associated protein, putative
           strong similarity to myrosinase-associated proteins
           GI:1769968, GI:1769970, GI:1216389,GI:1216391 from
           [Brassica napus]; contains InterPro Entry IPR001087
           Lipolytic enzyme, G-D-S-L family
          Length = 372

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +2

Query: 122 LACGSQAFIATLLFDPSMSALPIIAXKHSPSVGLFT 229
           + C S + +  LL  P +  L  I+ ++ P+VGLFT
Sbjct: 1   MECSSVSVLGILLVFPLLHNLVTISGQNLPAVGLFT 36


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,314,922
Number of Sequences: 28952
Number of extensions: 372941
Number of successful extensions: 856
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 856
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)