Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30855
         (876 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ...    29   0.66 
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    29   0.66 
SPBC1198.02 |dea2||adenine deaminase Dea2|Schizosaccharomyces po...    29   0.66 
SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyc...    27   3.5  
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe...    26   8.1  

>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 391

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +3

Query: 243 KGTIYDTLSQSHTKIVEENQHFKRSLAVTSTKIVGIKMNAKRNKL*H 383
           K  IYD    +   I+ + QH    LAV+  +I+GI  N+    L H
Sbjct: 27  KVAIYDVQKLNREPIIYDVQHSAWGLAVSPLRILGISSNSHNVNLFH 73


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 11/37 (29%), Positives = 26/37 (70%)
 Frame = -2

Query: 572  YDLANALRQGALDSSSQFEERALSTRR*VRVLFDEGL 462
            +D A+++ +GA ++++ F+ER +   R  R++ D+G+
Sbjct: 2912 FDFASSISEGARNTTTVFDERHIEKLRLSRLMSDDGV 2948


>SPBC1198.02 |dea2||adenine deaminase Dea2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 367

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 19/67 (28%), Positives = 32/67 (47%)
 Frame = -2

Query: 650 PAYTSPHLNHSHFLILLNFHTAIERHYDLANALRQGALDSSSQFEERALSTRR*VRVLFD 471
           PAY   +   ++F I  +F+  ++    +ANA   G+  S  + EE   S ++ V+    
Sbjct: 292 PAYFGGYTLENYFAIQKHFNLTVKEWVFIANAAINGSWISGKRKEELLSSVQKCVKEYTA 351

Query: 470 EGLTPKT 450
           E   PKT
Sbjct: 352 EIQQPKT 358


>SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 835

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 566 NHSAFR*QCENLKVLRNGSDSNVGLY 643
           NH  +   C  L+VL    D NVG+Y
Sbjct: 414 NHQEYVDVCRELRVLNAARDPNVGIY 439


>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +3

Query: 168 HHHLDRSKLWPLSHI 212
           H HL R +LWPL+++
Sbjct: 101 HGHLPRPRLWPLNYL 115


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,300,721
Number of Sequences: 5004
Number of extensions: 62710
Number of successful extensions: 121
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)