Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30855
         (876 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0029 - 369791-370637,370704-371218                               28   8.5  
06_01_0347 + 2514831-2515068,2515126-2515304,2515514-2515747,251...    28   8.5  

>10_01_0029 - 369791-370637,370704-371218
          Length = 453

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 17/37 (45%), Positives = 21/37 (56%)
 Frame = -1

Query: 321 LKTV*NADFLRQF*CATVRAYRRLSPSTVDNGQSLEQ 211
           LK   N D +RQF  ATVR +RRL    +D G  L +
Sbjct: 156 LKQDYNEDLIRQF-YATVRQFRRLLNIRLDFGDDLHE 191


>06_01_0347 +
           2514831-2515068,2515126-2515304,2515514-2515747,
           2515882-2516137,2516300-2516496
          Length = 367

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 18/45 (40%), Positives = 23/45 (51%)
 Frame = -2

Query: 650 PAYTSPHLNHSHFLILLNFHTAIERHYDLANALRQGALDSSSQFE 516
           PAY SP  +  + LI  NF +A   +YD   AL   A+  S Q E
Sbjct: 106 PAYLSPDASGKNLLIGANFASAGSGYYD-HTALLYHAIPLSQQLE 149


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,640,187
Number of Sequences: 37544
Number of extensions: 349142
Number of successful extensions: 656
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)