Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30855
         (876 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g45280.1 68415.m05636 DNA repair family protein contains simi...    29   4.1  
At5g58350.1 68418.m07306 protein kinase family protein contains ...    28   9.4  
At5g50160.1 68418.m06212 ferric reductase-like transmembrane com...    28   9.4  

>At2g45280.1 68415.m05636 DNA repair family protein contains
           similarity to Swiss-Prot:O43502 DNA repair protein RAD51
           homolog 3 [Homo sapiens]
          Length = 363

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 20/76 (26%), Positives = 37/76 (48%)
 Frame = +1

Query: 79  IIYFRMCQEITLLSRINHLSIYKIFTSNVPIIILTVLNFGHCHTLF*TLAIVNSRRGQST 258
           I YFR+C     ++ +NHL  +     +V ++I+  + F H    +  LA    +R +  
Sbjct: 212 IFYFRVCSYTEQIALVNHLEKFISENKDVKVVIVDSITF-HFRQDYDDLA----QRTRVL 266

Query: 259 IRSHSRTLKLSKKISI 306
                + +KL+KK S+
Sbjct: 267 SEMALKFMKLAKKFSL 282


>At5g58350.1 68418.m07306 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 571

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = +1

Query: 91  RMCQEITLLSRINHLSIYKIFTSNVPIIILTVLNF 195
           R+  E+ LLS +NH SI + +TS + +   T LNF
Sbjct: 64  RLYSEVHLLSTLNHKSIIRFYTSWIDVHNHT-LNF 97


>At5g50160.1 68418.m06212 ferric reductase-like transmembrane
           component family protein contains Pfam profile PF01794:
           Ferric reductase like transmembrane component
          Length = 728

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = -3

Query: 286 ILVCDCESVS*IVPFYC*QWPKFRTMCDNGQSLERSR 176
           +LVC  ESV   V   C QWP+    C   + L RSR
Sbjct: 682 VLVCGPESVKEAVASMCRQWPQ----CFGVEDLRRSR 714


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,596,985
Number of Sequences: 28952
Number of extensions: 308796
Number of successful extensions: 628
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2058178400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)