Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30854
         (828 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr 3|...    49   7e-07
SPAC688.06c |slx4||structure-specific endonuclease subunit |Schi...    26   7.5  
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p...    25   9.9  

>SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 834

 Score = 49.2 bits (112), Expect = 7e-07
 Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 5/86 (5%)
 Frame = +3

Query: 6    PTRYHAVCNDGRIPENEGQHLAYYLCHLYARCMRAVSYPTPTYYAHLACLRAR--SLTYG 179
            P  Y  + ++ ++P ++ Q L Y LC++YAR   AVS   P YYAHL    AR   +T  
Sbjct: 743  PVHYTVLHDEIQMPPDQFQTLCYNLCYVYARATSAVSLVPPVYYAHLVSNLARYQDVTAD 802

Query: 180  EIF---NNNDLEKNPKRLRVLDSMLK 248
            + F   +   +++  K L  L S LK
Sbjct: 803  DTFVETSEASMDQEVKPLLALSSKLK 828


>SPAC688.06c |slx4||structure-specific endonuclease subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 419

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -1

Query: 732 NPSECRDTIY*GFYHDNRDLKSP*GYLESHMPNL 631
           N + CR+T     YH NR+  S  G+     P L
Sbjct: 132 NSASCRNTFEHSAYHSNREEISSSGFYYHRKPQL 165


>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 505

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 598 DKPKKFHFLVLQIWHV 645
           +KP  F FL L  WHV
Sbjct: 163 EKPMYFRFLTLMAWHV 178


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,182,662
Number of Sequences: 5004
Number of extensions: 62825
Number of successful extensions: 117
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)